(Q30710808)

12 September 2017

Refined DNase-seq protocol and data analysis reveals intrinsic bias in transcription factor footprint identification (English)

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12 September 2017

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12

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PubMed publication ID

26 June 2017

Housheng Hansen He

1

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Clifford A. Meyer

2

object named as

Clifford A Meyer

1 reference

12 September 2017

Sheng'en Shawn Hu

3

1 reference

12 September 2017

Mei-Wei Chen

4

1 reference

12 September 2017

Chongzhi Zang

5

1 reference

12 September 2017

Yin Liu

6

1 reference

12 September 2017

Prakash K Rao

7

1 reference

12 September 2017

Teng Fei

8

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12 September 2017

Han Xu

9

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12 September 2017

Henry Long

10

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12 September 2017

X Shirley Liu

11

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12 September 2017

8 December 2013

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12 September 2017

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12 September 2017

11

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12 September 2017

1

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12 September 2017

73-78

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Probing DNA shape and methylation state on a genomic scale with DNase I.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4018771

Controls of nucleosome positioning in the human genome.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4018771

Chromatin accessibility reveals insights into androgen receptor activation and transcriptional specificity

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4018771

Systematic localization of common disease-associated variation in regulatory DNA

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4018771

An expansive human regulatory lexicon encoded in transcription factor footprints

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4018771

The accessible chromatin landscape of the human genome

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4018771

An integrated encyclopedia of DNA elements in the human genome

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4018771

Rapid genome-scale mapping of chromatin accessibility in tissue

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4018771

New insights into nucleosome and chromatin structure: an ordered state or a disordered affair?

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4018771

Differential DNase I hypersensitivity reveals factor-dependent chromatin dynamics

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4018771

DNase I sensitivity QTLs are a major determinant of human expression variation

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4018771

Dynamic exchange at regulatory elements during chromatin remodeling underlies assisted loading mechanism

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4018771

Open chromatin defined by DNaseI and FAIRE identifies regulatory elements that shape cell-type identity

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4018771

Chromatin accessibility pre-determines glucocorticoid receptor binding patterns.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4018771

High-resolution genome-wide in vivo footprinting of diverse transcription factors in human cells

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4018771

Unbiased, genome-wide in vivo mapping of transcriptional regulatory elements reveals sex differences in chromatin structure associated with sex-specific liver gene expression

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4018771

Nucleosome dynamics define transcriptional enhancers

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4018771

Identifying positioned nucleosomes with epigenetic marks in human from ChIP-Seq

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4018771

Model-based analysis of ChIP-Seq (MACS)

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4018771

TRANSFAC and its module TRANSCompel: transcriptional gene regulation in eukaryotes

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4018771

The effect of divalent cations on the mode of action of DNase I. The initial reaction products produced from covalently closed circular DNA

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4018771

DNAase footprinting a simple method for the detection of protein-DNA binding specificity

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4018771

Prevalent positive epistasis in Escherichia coli and Saccharomyces cerevisiae metabolic networks

20 June 2018

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FNMETH.2762

21 January 2018

Identifiers

DOI

10.1038/NMETH.2762

1 reference

Dimensions Publication ID

12 September 2017

0 references

1 reference

12 September 2017

PubMed publication ID

24317252

1 reference