(Q30725739)

13 September 2017

Methylation of the nucleobases in RNA oligonucleotides mediates duplex-hairpin conversion (English)

1 reference

13 September 2017

3

C Höbartner

1 reference

13 September 2017

R Micura

1

1 reference

13 September 2017

W Pils

2

1 reference

13 September 2017

K Grubmayr

4

1 reference

13 September 2017

M O Ebert

5

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13 September 2017

B Jaun

6

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13 September 2017

language of work or name

English

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publication date

1 October 2001

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13 September 2017

9

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inferred from page(s)

published in

Nucleic Acids Research

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13 September 2017

29

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13 September 2017

19

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13 September 2017

3997-4005

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Impact of CpG methylation on structure, dynamics and solvation of cAMP DNA responsive element

13 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=115353

Minor groove functional groups are critical for the B-form conformation of duplex DNA.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=115353

Discriminating duplex and hairpin oligonucleotides using chemical shifts: application to the anticodon stem-loop of Escherichia coli tRNA(Phe)

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=115353

Unique structural and stabilizing roles for the individual pseudouridine residues in the 1920 region of Escherichia coli 23S rRNA

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=115353

RNA folding at elementary step resolution

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=115353

Functional links between nuclear structure, gene expression, DNA replication, and methylation

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=115353

Complete suboptimal folding of RNA and the stability of secondary structures.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=115353

Synthesis and pairing properties of oligoribonucleotide analogues containing a metal-binding site attached to beta-D-allofuranosyl cytosine

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=115353

N 2-methylguanosine is iso-energetic with guanosine in RNA duplexes and GNRA tetraloops

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=115353

The structure of a methylated tetraloop in 16S ribosomal RNA

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=115353

Structure of an RNA hairpin loop with a 5'-CGUUUCG-3' loop motif by heteronuclear NMR spectroscopy and distance geometry

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=115353

The RNA modification database

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=115353

The importance of being modified: roles of modified nucleosides and Mg2+ in RNA structure and function.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=115353

A comparison of the hairpin stability of the palindromic d(CGCG(A/T)4CGCG) oligonucleotides

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=115353

Structural effects of the C2-methylhypoxanthine:cytosine base pair in B-DNA: A combined NMR and X-ray diffraction study of d(CGC[m2I]AATTCGCG).

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=115353

Purine-purine mismatches in RNA helices: evidence for protonated G.A pairs and next-nearest neighbor effects

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=115353

Effects of methylation on the stability of nucleic acid conformations: studies at the monomer level.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=115353

Calculating thermodynamic data for transitions of any molecularity from equilibrium melting curves

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=115353

Methylation of the EcoRI recognition site does not alter DNA conformation: the crystal structure of d(CGCGAm6ATTCGCG) at 2.0-A resolution

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=115353

High-resolution structure of a mutagenic lesion in DNA

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=115353

1H NMR of 5'CGCGTATATACGCG3', a duplex and a four-membered loop

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=115353

Structural consequences of a carcinogenic alkylation lesion on DNA: effect of O6-ethylguanine on the molecular structure of the d(CGC[e6G]AATTCGCG)-netropsin complex

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=115353

Site-selected introduction of modified purine and pyrimidine ribonucleosides into RNA by automated phosphoramidite chemistry.

20 June 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2F29.19.3997

Solution structure of the conserved 16 S-like ribosomal RNA UGAA tetraloop

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2F29.19.3997

Effects of DNA methylation on DNA-binding proteins and gene expression.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2F29.19.3997

Structural Polymorphism and Dynamism in the DNA Segment GATCTTCCCCCCGGAA: NMR Investigations of Hairpin, Dumbbell, Nicked Duplex, Parallel Strands, and i-Motif

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2F29.19.3997

Thermodynamic contribution of nucleoside modifications to yeast tRNA(Phe) anticodon stem loop analogs.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=115353

Secondary structure dimorphism and interconversion between hairpin and duplex form of oligoribonucleotides

25 November 2018

1 reference

12 December 2020

Synthesis and characterization of the native anticodon domain of E. coli TRNA(Lys): simultaneous incorporation of modified nucleosides mnm(5)s(2)U, t(6)A, and pseudouridine using phosphoramidite chemistry

1 reference

12 December 2020

Solid-phase synthesis and high-resolution NMR studies of two synthetic double-helical RNA dodecamers: r(CGCGAAUUCGCG) and r(CGCGUAUACGCG)

1 reference

12 December 2020

Hairpin and duplex formation in DNA fragments CCAATTTTGG, CCAATTTTTTGG, and CCATTTTTGG: a proton NMR study

1 reference

12 December 2020

Bridged Cyclic Oligoribonucleotides as Model Compounds for Codon - Anticodon Pairing R.M. acknowledges the Austrian Academy of Science for an APART fellowship (Austrian Programme for Advanced Research and Technology). This work was supported by the

1 reference

12 December 2020

The duplex-hairpin conformational transition of d(CGCGCGATCGCGCG) and d(CGCGCGTACGCGCG): a thermodynamic and kinetic study

1 reference

12 December 2020

Base-stacking and base-pairing contributions to helix stability: thermodynamics of double-helix formation with CCGG, CCGGp, CCGGAp, ACCGGp, CCGGUp, and ACCGGUp

1 reference

12 December 2020

Energetics of the hairpin to mismatched duplex transition of d(GCCGCAGC) on NaCl solution

1 reference

12 December 2020

Thermodynamics of single mismatches in RNA duplexes

1 reference

12 December 2020

Identifiers

DOI

10.1093/NAR/29.19.3997

1 reference

13 September 2017

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13 September 2017

PubMed publication ID

11574682

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