(Q30738106)

English

Pyrosequencing for assessing diversity of eukaryotic microbes: analysis of data on marine planktonic ciliates and comparison with traditional methods

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scholarly article

1 reference

Europe PubMed Central

PubMed publication ID

26 June 2017

Pyrosequencing for assessing diversity of eukaryotic microbes: analysis of data on marine planktonic ciliates and comparison with traditional methods (English)

1 reference

Europe PubMed Central

PubMed publication ID

26 June 2017

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George B McManus

object named as

George B McManus

4

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Jean-David Grattepanche

object named as

Jean-David Grattepanche

2

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Luciana F Santoferrara

object named as

Luciana F Santoferrara

1

0 references

object named as

Laura A Katz

3

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publication date

18 February 2014

1 reference

Europe PubMed Central

PubMed publication ID

26 June 2017

Environmental Microbiology

1 reference

Europe PubMed Central

PubMed publication ID

26 June 2017

16

1 reference

Europe PubMed Central

PubMed publication ID

26 June 2017

9

1 reference

Europe PubMed Central

PubMed publication ID

26 June 2017

2752-2763

1 reference

Europe PubMed Central

PubMed publication ID

26 June 2017

Reconciling cladistic and genetic analyses in choreotrichid ciliates (Ciliophora, Spirotricha, Oligotrichea).

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12380

21 January 2018

Pelagostrobilidium neptuni (Montagnes and Taylor, 1994) and Strombidium biarmatum nov. spec. (Ciliophora, Oligotrichea): phylogenetic position inferred from morphology, ontogenesis, and gene sequence data

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12380

21 January 2018

Basic local alignment search tool

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12380

21 January 2018

A method for studying protistan diversity using massively parallel sequencing of V9 hypervariable regions of small-subunit ribosomal RNA genes

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12380

21 January 2018

Diversity and vertical distribution of microbial eukaryotes in the snow, sea ice and seawater near the north pole at the end of the polar night

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12380

21 January 2018

Accuracy of protist diversity assessments: morphology compared with cloning and direct pyrosequencing of 18S rRNA genes and ITS regions using the conspicuous tintinnid ciliates as a case study

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12380

21 January 2018

Sequencing our way towards understanding global eukaryotic biodiversity

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12380

21 January 2018

Metagenetic community analysis of microbial eukaryotes illuminates biogeographic patterns in deep-sea and shallow water sediments

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12380

21 January 2018

Diversity patterns of uncultured Haptophytes unravelled by pyrosequencing in Naples Bay.

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12380

21 January 2018

QIIME allows analysis of high-throughput community sequencing data

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12380

21 January 2018

Pyrosequencing analysis of the protist communities in a High Arctic meromictic lake: DNA preservation and change

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12380

21 January 2018

jModelTest 2: more models, new heuristics and parallel computing

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12380

21 January 2018

Ciliate diversity and distribution across an environmental and depth gradient in Long Island Sound, USA.

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12380

21 January 2018

Diversity of oligotrichia and choreotrichia ciliates in coastal marine sediments and in overlying plankton

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12380

21 January 2018

MUSCLE: multiple sequence alignment with high accuracy and high throughput

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12380

21 January 2018

Search and clustering orders of magnitude faster than BLAST

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12380

21 January 2018

UCHIME improves sensitivity and speed of chimera detection

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12380

21 January 2018

Protistan microbial observatory in the Cariaco Basin, Caribbean. I. Pyrosequencing vs Sanger insights into species richness

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12380

21 January 2018

Multiple cosmopolitan ecotypes within a microbial eukaryote morphospecies

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12380

21 January 2018

Extremely high copy numbers and polymorphisms of the rDNA operon estimated from single cell analysis of oligotrich and peritrich ciliates.

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12380

21 January 2018

Ironing out the wrinkles in the rare biosphere through improved OTU clustering

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12380

21 January 2018

Recent developments in the MAFFT multiple sequence alignment program

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12380

21 January 2018

Wrinkles in the rare biosphere: pyrosequencing errors can lead to artificial inflation of diversity estimates

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12380

21 January 2018

Multigene-based analyses of the phylogenetic evolution of oligotrich ciliates, with consideration of the internal transcribed spacer 2 secondary structure of three systematically ambiguous genera

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12380

21 January 2018

Diversity patterns and activity of uncultured marine heterotrophic flagellates unveiled with pyrosequencing

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12380

21 January 2018

Eukaryotic diversity and phylogeny using small- and large-subunit ribosomal RNA genes from environmental samples

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12380

21 January 2018

Diversity in a hidden world: potential and limitation of next-generation sequencing for surveys of molecular diversity of eukaryotic microorganisms

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12380

21 January 2018

Microplanktonic community structure in a coastal system relative to a Phaeocystis bloom inferred from morphological and tag pyrosequencing methods

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12380

21 January 2018

Removing noise from pyrosequenced amplicons

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12380

21 January 2018

Rapidly denoising pyrosequencing amplicon reads by exploiting rank-abundance distributions

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12380

21 January 2018

Utility of genetic markers and morphology for species discrimination within the order Tintinnida (Ciliophora, Spirotrichea).

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12380

21 January 2018

Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12380

21 January 2018

Insights into the diversity of choreotrich and oligotrich ciliates (Class: Spirotrichea) based on genealogical analyses of multiple loci

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12380

21 January 2018

Microbial diversity in the deep sea and the underexplored "rare biosphere"

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12380

21 January 2018

RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12380

21 January 2018

Massively parallel tag sequencing reveals the complexity of anaerobic marine protistan communities

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12380

21 January 2018

Multiple marker parallel tag environmental DNA sequencing reveals a highly complex eukaryotic community in marine anoxic water

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12380

21 January 2018

A morphogenetic survey on ciliate plankton from a mountain lake pinpoints the necessity of lineage-specific barcode markers in microbial ecology.

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12380

21 January 2018

Two decades of describing the unseen majority of aquatic microbial diversity

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12380

21 January 2018

The Biology and Ecology of Tintinnid Ciliates

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12380

21 January 2018

Identifiers

10.1111/1462-2920.12380

1 reference

Europe PubMed Central

PubMed publication ID

26 June 2017

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

26 June 2017

ResearchGate publication ID

0 references

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