(Q30777076)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24626528%20AND%20SRC:MED&resulttype=core&format=json

10 March 2020

review article

1 reference

title

Advances in network-based metabolic pathway analysis and gene expression data integration (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24626528%20AND%20SRC:MED&resulttype=core&format=json

10 March 2020

1 reference

1 reference

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24626528%20AND%20SRC:MED&resulttype=core&format=json

10 March 2020

Angel Rubio

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24626528%20AND%20SRC:MED&resulttype=core&format=json

10 March 2020

John E. Beasley

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24626528%20AND%20SRC:MED&resulttype=core&format=json

10 March 2020

author name string

Jon Pey

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24626528%20AND%20SRC:MED&resulttype=core&format=json

10 March 2020

Luis Tobalina

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24626528%20AND%20SRC:MED&resulttype=core&format=json

10 March 2020

Francisco J Planes

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24626528%20AND%20SRC:MED&resulttype=core&format=json

10 March 2020

publication date

13 March 2014

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24626528%20AND%20SRC:MED&resulttype=core&format=json

Briefings in Bioinformatics

10 March 2020

published in

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24626528%20AND%20SRC:MED&resulttype=core&format=json

10 March 2020

volume

16

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24626528%20AND%20SRC:MED&resulttype=core&format=json

10 March 2020

issue

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24626528%20AND%20SRC:MED&resulttype=core&format=json

10 March 2020

page(s)

265-279

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24626528%20AND%20SRC:MED&resulttype=core&format=json

KEGG for integration and interpretation of large-scale molecular data sets

10 March 2020

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21 January 2018

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21 January 2018

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21 January 2018

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Constraining the metabolic genotype-phenotype relationship using a phylogeny of in silico methods

21 January 2018

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Metabolic pathways in the post-genome era.

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A general definition of metabolic pathways useful for systematic organization and analysis of complex metabolic networks

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Pathway analysis, engineering, and physiological considerations for redirecting central metabolism.

21 January 2018

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Detection of elementary flux modes in biochemical networks: a promising tool for pathway analysis and metabolic engineering.

21 January 2018

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21 January 2018

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The geometry of the flux cone of a metabolic network

21 January 2018

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Computation of elementary modes: a unifying framework and the new binary approach

21 January 2018

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Theory for the systemic definition of metabolic pathways and their use in interpreting metabolic function from a pathway-oriented perspective

21 January 2018

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Algorithmic approaches for computing elementary modes in large biochemical reaction networks.

21 January 2018

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21 January 2018

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FluxAnalyzer: exploring structure, pathways, and flux distributions in metabolic networks on interactive flux maps.

21 January 2018

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SNA--a toolbox for the stoichiometric analysis of metabolic networks

21 January 2018

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An improved algorithm for stoichiometric network analysis: theory and applications.

21 January 2018

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Expa: a program for calculating extreme pathways in biochemical reaction networks

21 January 2018

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Large-scale computation of elementary flux modes with bit pattern trees

21 January 2018

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The Systems Biology Research Tool: evolvable open-source software

21 January 2018

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Combinatorial complexity of pathway analysis in metabolic networks.

21 January 2018

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Modes and cuts in metabolic networks: complexity and algorithms

21 January 2018

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Global reconstruction of the human metabolic network based on genomic and bibliomic data

21 January 2018

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A community-driven global reconstruction of human metabolism.

21 January 2018

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Computing the shortest elementary flux modes in genome-scale metabolic networks

21 January 2018

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Evolution of cross-feeding in microbial populations

21 January 2018

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Selection of human tissue-specific elementary flux modes using gene expression data

21 January 2018

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A new constraint-based description of the steady-state flux cone of metabolic networks

21 January 2018

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Observing local and global properties of metabolic pathways: 'load points' and 'choke points' in the metabolic networks

21 January 2018

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Estimating novel potential drug targets of Plasmodium falciparum by analysing the metabolic network of knock-out strains in silico

21 January 2018

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A network-based method for target selection in metabolic networks

21 January 2018

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The implications of human metabolic network topology for disease comorbidity

21 January 2018

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Inferring meaningful pathways in weighted metabolic networks.

21 January 2018

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Can sugars be produced from fatty acids? A test case for pathway analysis tools.

21 January 2018

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In response to 'Can sugars be produced from fatty acids? A test case for pathway analysis tools'.

21 January 2018

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An overview of data models for the analysis of biochemical pathways

21 January 2018

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Path finding methods accounting for stoichiometry in metabolic networks.

21 January 2018

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A network-based approach for predicting key enzymes explaining metabolite abundance alterations in a disease phenotype

21 January 2018

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Integrating gene and protein expression data with genome-scale metabolic networks to infer functional pathways

21 January 2018

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Can the whole be less than the sum of its parts? Pathway analysis in genome-scale metabolic networks using elementary flux patterns

21 January 2018

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Exploring the pathway structure of metabolism: decomposition into subnetworks and application to Mycoplasma pneumoniae

21 January 2018

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Biochemical network models simplified by balanced truncation.

21 January 2018

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In silico evidence for gluconeogenesis from fatty acids in humans

21 January 2018

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DNA microarray detection of metabolic responses to protein overproduction in Escherichia coli

21 January 2018

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Empirical bayes methods and false discovery rates for microarrays

21 January 2018

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Significance analysis of microarrays applied to the ionizing radiation response

21 January 2018

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EDGE: extraction and analysis of differential gene expression.

21 January 2018

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Genome Expression Pathway Analysis Tool--analysis and visualization of microarray gene expression data under genomic, proteomic and metabolic context

21 January 2018

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Estimating the proportion of microarray probes expressed in an RNA sample

21 January 2018

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The Gene Expression Barcode: leveraging public data repositories to begin cataloging the human and murine transcriptomes

21 January 2018

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Genomic analysis of metabolic pathway gene expression in mice

21 January 2018

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Molecular evidence for mitochondrial dysfunction in bipolar disorder.

21 January 2018

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High resolution genomic analysis of sporadic breast cancer using array-based comparative genomic hybridization

21 January 2018

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SubpathwayMiner: a software package for flexible identification of pathways

21 January 2018

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Observing metabolic functions at the genome scale

21 January 2018

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BiGG: a Biochemical Genetic and Genomic knowledgebase of large scale metabolic reconstructions

21 January 2018

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Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists

21 January 2018

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Global functional profiling of gene expression.

21 January 2018

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GOstat: find statistically overrepresented Gene Ontologies within a group of genes

21 January 2018

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Enrichment or depletion of a GO category within a class of genes: which test?

21 January 2018

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The Database of Interacting Proteins: 2004 update

21 January 2018

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MAPPFinder: using Gene Ontology and GenMAPP to create a global gene-expression profile from microarray data

21 January 2018

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Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles

21 January 2018

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Significance analysis of functional categories in gene expression studies: a structured permutation approach

21 January 2018

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YANA - a software tool for analyzing flux modes, gene-expression and enzyme activities

21 January 2018

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KEGG spider: interpretation of genomics data in the context of the global gene metabolic network

21 January 2018

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Pathway discovery in metabolic networks by subgraph extraction

21 January 2018

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New strategy for the representation and the integration of biomolecular knowledge at a cellular scale

21 January 2018

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ON ELEMENTARY FLUX MODES IN BIOCHEMICAL REACTION SYSTEMS AT STEADY STATE

21 January 2018

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Exploring metabolic pathways in genome-scale networks via generating flux modes

21 January 2018

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21 January 2018

Identifiers

DOI

10.1093/BIB/BBU009

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24626528%20AND%20SRC:MED&resulttype=core&format=json

journals/bib/RezolaPTRBP15

10 March 2020

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference