(Q30858102)

9 October 2017

svaseq: removing batch effects and other unwanted noise from sequencing data (English)

1 reference

9 October 2017

Jeffrey T Leek

1

1 reference

PMCID

4245966

9 October 2017

language of work or name

English

0 references

publication date

7 October 2014

1 reference

9 October 2017

Nucleic Acids Research

1 reference

9 October 2017

42

1 reference

9 October 2017

21

1 reference

Creative Commons Attribution 4.0 International

9 October 2017

start time

3 May 2017

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

describes a project that uses

limma

1 reference

22 June 2022

https://europepmc.org/article/PMC/4245966

based on heuristic

inferred from PubMed Central ID database lookup

cites work

Estimating False Discovery Proportion Under Arbitrary Covariance Dependence

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4245966

Silencing of odorant receptor genes by G protein βγ signaling ensures the expression of one odorant receptor per olfactory sensory neuron.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4245966

Reproducibility of high-throughput mRNA and small RNA sequencing across laboratories

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4245966

Transcriptome and genome sequencing uncovers functional variation in humans

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4245966

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4245966

Learning from our GWAS mistakes: from experimental design to scientific method

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4245966

Using control genes to correct for unwanted variation in microarray data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4245966

ReCount: a multi-experiment resource of analysis-ready RNA-seq gene count datasets

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4245966

Addressing challenges in the production and analysis of illumina sequencing data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4245966

Sequencing technology does not eliminate biological variability

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4245966

Differential expression analysis for sequence count data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4245966

Tackling the widespread and critical impact of batch effects in high-throughput data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4245966

Correction for hidden confounders in the genetic analysis of gene expression

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4245966

RETRACTED: Genetic signatures of exceptional longevity in humans

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4245966

Asymptotic conditional singular value decomposition for high-dimensional genomic data.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4245966

A Bayesian framework to account for complex non-genetic factors in gene expression levels greatly increases power in eQTL studies

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4245966

Understanding mechanisms underlying human gene expression variation with RNA sequencing

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4245966

Transcriptome genetics using second generation sequencing in a Caucasian population

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4245966

Evaluation of statistical methods for normalization and differential expression in mRNA-Seq experiments

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4245966

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4245966

A general framework for multiple testing dependence

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4245966

Capturing heterogeneity in gene expression studies by surrogate variable analysis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4245966

Principal components analysis corrects for stratification in genome-wide association studies

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4245966

Independent surrogate variable analysis to deconvolve confounding factors in large-scale microarray profiling studies.

21 June 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKU864

Multiple-laboratory comparison of microarray platforms

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKU864

On the design and analysis of gene expression studies in human populations

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKU864

The Joint Null Criterion for Multiple Hypothesis Tests

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKU864

Asymptotic Theory for Principal Component Analysis

21 January 2018

1 reference

20 June 2022

https://opencitations.net/index/coci/api/v1/citations/10.1214/AOMS/1177704248

Identifiers

DOI

10.1093/NAR/GKU864

1 reference

9 October 2017

1 reference

9 October 2017

1 reference

PMCID

4245966