(Q30884356)

14 September 2017

An ensemble strategy that significantly improves de novo assembly of microbial genomes from metagenomic next-generation sequencing data (English)

1 reference

14 September 2017

1 reference

3

1 reference

PubMed publication ID

27 June 2017

6

1 reference

PubMed publication ID

27 June 2017

Xutao Deng

1

1 reference

14 September 2017

Samia N Naccache

2

1 reference

14 September 2017

Scot Federman

4

1 reference

14 September 2017

Linlin Li

5

1 reference

14 September 2017

Eric L Delwart

7

1 reference

14 September 2017

language of work or name

English

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publication date

13 January 2015

1 reference

14 September 2017

Nucleic Acids Research

1 reference

14 September 2017

43

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14 September 2017

7

1 reference

14 September 2017

e46

1 reference

Creative Commons Attribution 4.0 International

14 September 2017

start time

8 November 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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A cloud-compatible bioinformatics pipeline for ultrarapid pathogen identification from next-generation sequencing of clinical samples

21 June 2018

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Automated ensemble assembly and validation of microbial genomes

21 June 2018

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Divergent picobirnaviruses in human feces

21 June 2018

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Feline fecal virome reveals novel and prevalent enteric viruses

21 June 2018

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Comparison of different assembly and annotation tools on analysis of simulated viral metagenomic communities in the gut.

21 June 2018

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The MaSuRCA genome assembler

21 June 2018

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Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species

21 June 2018

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21 June 2018

Viral pathogen discovery

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SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler

21 June 2018

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A roadmap to the human virome

21 June 2018

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The mitochondrial genome and a 60-kb nuclear DNA segment from Naegleria fowleri, the causative agent of primary amoebic meningoencephalitis.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4402509

Discovery of a novel polyomavirus in acute diarrheal samples from children

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4402509

A novel rhabdovirus associated with acute hemorrhagic fever in central Africa

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4402509

MetaVelvet: an extension of Velvet assembler to de novo metagenome assembly from short sequence reads

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4402509

Next-generation and whole-genome sequencing in the diagnostic clinical microbiology laboratory

21 June 2018

1 reference

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IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4402509

Fast gapped-read alignment with Bowtie 2

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4402509

GAGE: A critical evaluation of genome assemblies and assembly algorithms

21 June 2018

1 reference

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Assemblathon 1: a competitive assessment of de novo short read assembly methods

21 June 2018

1 reference

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Full-length transcriptome assembly from RNA-Seq data without a reference genome

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4402509

Next generation sequence assembly with AMOS.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4402509

Assembly algorithms for next-generation sequencing data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4402509

Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4402509

The Sequence Alignment/Map format and SAMtools

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4402509

ABySS: a parallel assembler for short read sequence data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4402509

Velvet: algorithms for de novo short read assembly using de Bruijn graphs

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4402509

ALLPATHS: de novo assembly of whole-genome shotgun microreads

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4402509

Metagenomics: read length matters

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4402509

Genome sequencing in microfabricated high-density picolitre reactors

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4402509

BLAST: at the core of a powerful and diverse set of sequence analysis tools

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4402509

A whole-genome assembly of Drosophila

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4402509

CAP3: A DNA sequence assembly program

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4402509

Extending assembly of short DNA sequences to handle error.

21 June 2018

1 reference

Crossref

https://api.crossref.org/works/10.1093%2FNAR%2FGKV002

Informed and automated k-mer size selection for genome assembly

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1093%2FNAR%2FGKV002

21 January 2018

Identifiers

DOI

10.1093/NAR/GKV002

1 reference

14 September 2017

1 reference

14 September 2017

PubMed publication ID

25586223

1 reference