(Q34279771)

1 August 2017

title

Next-generation and whole-genome sequencing in the diagnostic clinical microbiology laboratory (English)

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1 August 2017

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whole genome sequencing

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W M Dunne

1

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1 August 2017

L F Westblade

series ordinal

2

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1 August 2017

B Ford

series ordinal

3

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1 August 2017

language of work or name

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8 June 2012

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1 August 2017

number of pages

8

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European Journal of Clinical Microbiology & Infectious Diseases

inferred from page(s)

published in

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1 August 2017

volume

31

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1 August 2017

issue

8

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1 August 2017

page(s)

1719-1726

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Clinical microbiology in the year 2025.

1 August 2017

cites work

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21 January 2018

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Evaluation of the IDI-MRSA assay for detection of methicillin-resistant staphylococcus aureus from nasal and rectal specimens pooled in a selective broth

21 January 2018

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Detection of staphylococcal cassette chromosome mec type XI carrying highly divergent mecA, mecI, mecR1, blaZ, and ccr genes in human clinical isolates of clonal complex 130 methicillin-resistant Staphylococcus aureus

21 January 2018

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Whole-genome random sequencing and assembly of Haemophilus influenzae Rd

21 January 2018

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A physical map of the human genome

21 January 2018

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A decade's perspective on DNA sequencing technology

21 January 2018

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Next-generation DNA sequencing methods

21 January 2018

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https://api.crossref.org/works/10.1007%2FS10096-012-1641-7

Next-generation DNA sequencing

21 January 2018

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A window into third-generation sequencing

21 January 2018

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The nature and dynamics of bacterial genomes.

21 January 2018

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High-throughput sequencing and clinical microbiology: progress, opportunities and challenges

21 January 2018

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Detection of mutations in the FemXAB protein family in oxacillin-susceptible mecA-positive Staphylococcus aureus clinical isolates.

21 January 2018

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Whole-genome comparison of two Acinetobacter baumannii isolates from a single patient, where resistance developed during tigecycline therapy

21 January 2018

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IMG: the Integrated Microbial Genomes database and comparative analysis system

21 January 2018

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Ribosomal RNA depletion for massively parallel bacterial RNA-sequencing applications

21 January 2018

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Multilocus genotyping assays for single nucleotide polymorphism-based subtyping of Listeria monocytogenes isolates.

21 January 2018

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Cytokine gene polymorphisms influence mucosal cytokine expression, gastric inflammation, and host specific colonisation during Helicobacter pylori infection

21 January 2018

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Microbial virulence determinants and the pathogenesis of urinary tract infection

21 January 2018

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Both host and pathogen factors predispose to Escherichia coli urinary-source bacteremia in hospitalized patients.

21 January 2018

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Are diagnostic and public health bacteriology ready to become branches of genomic medicine?

21 January 2018

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The origin of the Haitian cholera outbreak strain

21 January 2018

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Prospective genomic characterization of the German enterohemorrhagic Escherichia coli O104:H4 outbreak by rapid next generation sequencing technology

21 January 2018

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Open-Source Genomic Analysis of Shiga-Toxin–Producing E. coli O104:H4

21 January 2018

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Human papillomavirus genotyping by 454 next generation sequencing technology

21 January 2018

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Diversity of the human intestinal microbial flora

21 January 2018

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Comparative metagenomics revealed commonly enriched gene sets in human gut microbiomes

21 January 2018

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A core gut microbiome in obese and lean twins

21 January 2018

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The effect of diet on the human gut microbiome: a metagenomic analysis in humanized gnotobiotic mice

21 January 2018

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Organismal, genetic, and transcriptional variation in the deeply sequenced gut microbiomes of identical twins

21 January 2018

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Metagenomic systems biology of the human gut microbiome reveals topological shifts associated with obesity and inflammatory bowel disease

21 January 2018

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Direct metagenomic detection of viral pathogens in nasal and fecal specimens using an unbiased high-throughput sequencing approach

21 January 2018

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Metagenomic analysis of respiratory tract DNA viral communities in cystic fibrosis and non-cystic fibrosis individuals

21 January 2018

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The dynamics of the vaginal microbiome during infertility therapy with in vitro fertilization-embryo transfer.

21 January 2018

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Diversity of human vaginal bacterial communities and associations with clinically defined bacterial vaginosis.

21 January 2018

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Molecular identification of bacteria associated with bacterial vaginosis.

21 January 2018

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Deep sequencing of the vaginal microbiota of women with HIV.

21 January 2018

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Comparison of bacterial microbiota in skin biopsies from normal and psoriatic skin

21 January 2018

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Temporal shifts in the skin microbiome associated with disease flares and treatment in children with atopic dermatitis

21 January 2018

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Diversity of the human skin microbiome early in life

21 January 2018

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https://api.crossref.org/works/10.1007%2FS10096-012-1641-7

Topographical and temporal diversity of the human skin microbiome

21 January 2018

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https://api.crossref.org/works/10.1007%2FS10096-012-1641-7

Evidence of uncultivated bacteria in the adult female bladder.

21 January 2018

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Characteristic male urine microbiomes associate with asymptomatic sexually transmitted infection

21 January 2018

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The microbial communities in male first catch urine are highly similar to those in paired urethral swab specimens

21 January 2018

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Metagenomic study of the oral microbiota by Illumina high-throughput sequencing.

21 January 2018

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Study of inter- and intra-individual variations in the salivary microbiota

21 January 2018

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Evaluation of the bacterial diversity among and within individual venous leg ulcers using bacterial tag-encoded FLX and titanium amplicon pyrosequencing and metagenomic approaches

21 January 2018

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Survey of bacterial diversity in chronic wounds using pyrosequencing, DGGE, and full ribosome shotgun sequencing

21 January 2018

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https://api.crossref.org/works/10.1007%2FS10096-012-1641-7

Human microbiome in health and disease

21 January 2018

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https://api.crossref.org/works/10.1007%2FS10096-012-1641-7

Reduced diversity of faecal microbiota in Crohn's disease revealed by a metagenomic approach

21 January 2018

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https://api.crossref.org/works/10.1007%2FS10096-012-1641-7

Comparative metagenomic study of alterations to the intestinal microbiota and risk of nosocomial Clostridum difficile-associated disease

21 January 2018

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https://api.crossref.org/works/10.1007%2FS10096-012-1641-7

Diet-induced obesity is linked to marked but reversible alterations in the mouse distal gut microbiome

21 January 2018

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Perspective: alpha-bugs, their microbial partners, and the link to colon cancer

21 January 2018

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Vancomycin-resistant Enterococcus domination of intestinal microbiota is enabled by antibiotic treatment in mice and precedes bloodstream invasion in humans.

21 January 2018

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https://api.crossref.org/works/10.1007%2FS10096-012-1641-7

A framework for variation discovery and genotyping using next-generation DNA sequencing data

21 January 2018

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https://api.crossref.org/works/10.1007%2FS10096-012-1641-7

The relationship between human papillomavirus status and other molecular prognostic markers in head and neck squamous cell carcinomas.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10096-012-1641-7

Determination of hepatitis C virus genotype by Pyrosequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10096-012-1641-7

Carrier testing for severe childhood recessive diseases by next-generation sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10096-012-1641-7

Comparison of sequence reads obtained from three next-generation sequencing platforms

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10096-012-1641-7

Base-calling of automated sequencer traces using phred. I. Accuracy assessment

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10096-012-1641-7

Estimation of errors in "raw" DNA sequences: a validation study

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS10096-012-1641-7

Virulence Characteristics of Escherichia coli Causing First Urinary Tract Infection Predict Risk of Second Infection

21 January 2018

1 reference

12 December 2020

Next-generation sequencing and its applications in molecular diagnostics

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12 December 2020

Rapid identification of methicillin-resistant Staphylococcus aureus and simultaneous species confirmation using real-time fluorescence PCR

1 reference

12 December 2020

Proteomic and transcriptomic analysis of linezolid resistance in Streptococcus pneumoniae

1 reference

12 December 2020

1 reference

12 December 2020

Identification of methicillin-resistant strains of staphylococci by polymerase chain reaction

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12 December 2020

10.1007/S10096-012-1641-7

Identifiers

DOI

1 reference

Dimensions Publication ID

1 August 2017

1024805226

0 references

1 reference