(Q30900293)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25717338%20AND%20SRC:MED&resulttype=core&format=json

1 March 2020

title

Integrating multi-omic features exploiting Chromosome Conformation Capture data (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25717338%20AND%20SRC:MED&resulttype=core&format=json

1 March 2020

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25717338%20AND%20SRC:MED&resulttype=core&format=json

1 March 2020

Luciano Milanesi

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25717338%20AND%20SRC:MED&resulttype=core&format=json

1 March 2020

Maurizio Drocco

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25717338%20AND%20SRC:MED&resulttype=core&format=json

1 March 2020

Marco Aldinucci

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25717338%20AND%20SRC:MED&resulttype=core&format=json

1 March 2020

Pietro Liò

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25717338%20AND%20SRC:MED&resulttype=core&format=json

1 March 2020

author name string

Fabio Tordini

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25717338%20AND%20SRC:MED&resulttype=core&format=json

1 March 2020

publication date

11 February 2015

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25717338%20AND%20SRC:MED&resulttype=core&format=json

1 March 2020

published in

Frontiers in Genetics

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25717338%20AND%20SRC:MED&resulttype=core&format=json

1 March 2020

volume

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25717338%20AND%20SRC:MED&resulttype=core&format=json

1 March 2020

page(s)

40

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25717338%20AND%20SRC:MED&resulttype=core&format=json

describes a project that uses

1 March 2020

Cytoscape

object named as

Cytoscape

2 references

9 June 2022

https://europepmc.org/search?query=(METHODS:'Cytoscape')

inferred from PubMed Central ID database lookup

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

limma

object named as

limma

2 references

22 June 2022

https://europepmc.org/article/PMC/4324155

inferred from PubMed Central ID database lookup

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

GEOquery

object named as

GEOquery

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

cites work

Statistical confidence estimation for Hi-C data reveals regulatory chromatin contacts

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4324155

Genomic Architecture may Influence Recurrent Chromosomal Translocation Frequency in the Igh Locus

21 June 2018

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Organization of the mitotic chromosome

21 June 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4324155

NuChart: an R package to study gene spatial neighbourhoods with multi-omics annotations.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4324155

Cohesin-based chromatin interactions enable regulated gene expression within preexisting architectural compartments

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4324155

Colocalization of coregulated genes: a steered molecular dynamics study of human chromosome 19.

21 June 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4324155

The properties of genome conformation and spatial gene interaction and regulation networks of normal and malignant human cell types

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4324155

Aberrant epigenetic gene regulation in lymphoid malignancies.

21 June 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4324155

Genomic hallmarks of genes involved in chromosomal translocations in hematological cancer

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4324155

TNFα signals through specialized factories where responsive coding and miRNA genes are transcribed

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4324155

Global changes in the nuclear positioning of genes and intra- and interdomain genomic interactions that orchestrate B cell fate

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4324155

Three-dimensional genome architecture influences partner selection for chromosomal translocations in human disease

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4324155

HiCNorm: removing biases in Hi-C data via Poisson regression

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4324155

HiTC: exploration of high-throughput 'C' experiments

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4324155

A genome-wide 3C-method for characterizing the three-dimensional architectures of genomes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4324155

Topological domains in mammalian genomes identified by analysis of chromatin interactions

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4324155

Spatial organization of the mouse genome and its role in recurrent chromosomal translocations

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4324155

Characterization of genome-wide enhancer-promoter interactions reveals co-expression of interacting genes and modes of higher order chromatin organization

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4324155

Extensive promoter-centered chromatin interactions provide a topological basis for transcription regulation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4324155

A decade of 3C technologies: insights into nuclear organization

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4324155

Intra- and inter-chromosomal interactions correlate with CTCF binding genome wide.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4324155

Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4324155

An oestrogen-receptor-α-bound human chromatin interactome

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4324155

Comprehensive mapping of long-range interactions reveals folding principles of the human genome

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4324155

Spatial genome organization in the formation of chromosomal translocations

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4324155

Recombinase, chromosomal translocations and lymphoid neoplasia: targeting mistakes and repair failures

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4324155

A comprehensive catalog of human KRAB-associated zinc finger genes: insights into the evolutionary history of a large family of transcriptional repressors

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4324155

Expression levels of TEL, AML1, and the fusion products TEL-AML1 and AML1-TEL versus drug sensitivity and clinical outcome in t(12;21)-positive pediatric acute lymphoblastic leukemia

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4324155

Cytogenetic and FISH studies in myelodysplasia, acute myeloid leukemia, chronic lymphocytic leukemia and lymphoma

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4324155

Network Structure and Knowledge Transfer: The Effects of Cohesion and Range

21 June 2018

1 reference

Crossref

https://api.crossref.org/works/10.3389%2FFGENE.2015.00040

Genomes in 3D improve one-dimensional assemblies

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.3389%2FFGENE.2015.00040

Distribution of DNA methylation, CpGs, and CpG islands in human isochores

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.3389%2FFGENE.2015.00040

CytoHiC: a cytoscape plugin for visual comparison of Hi-C networks

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25717338

12 December 2020

inferred from PubMed ID database lookup

networksis: A Package to Simulate Bipartite Graphs with Fixed Marginals Through Sequential Importance Sampling

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25717338

12 December 2020

inferred from PubMed ID database lookup

Identifiers

DOI

10.3389/FGENE.2015.00040

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25717338%20AND%20SRC:MED&resulttype=core&format=json

1 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25717338%20AND%20SRC:MED&resulttype=core&format=json

1 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25717338%20AND%20SRC:MED&resulttype=core&format=json