(Q30930642)

27 June 2017

title

High-throughput spatial mapping of single-cell RNA-seq data to tissue of origin (English)

1 reference

single cell transcriptomics

27 June 2017

0 references

1 reference

A curated database reveals trends in single-cell transcriptomics

https://www.nxn.se/single-cell-studies/data.tsv

7 February 2021

1 reference

Kaia Achim

1

0 references

Daria Gavriouchkina

Daria Gavriouchkina

4

0 references

Luis R. Saraiva

Luis R Saraiva

3

0 references

John Marioni

John C Marioni

7

0 references

Detlev Arendt

6

Detlev Arendt

1 reference

27 June 2017

Jean-Baptiste Pettit

2

1 reference

27 June 2017

Tomas Larsson

5

1 reference

27 June 2017

publication date

13 April 2015

1 reference

external data available at URL

27 June 2017

https://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-2865

1 reference

A curated database reveals trends in single-cell transcriptomics

https://www.nxn.se/single-cell-studies/data.tsv

11 February 2021

1 reference

27 June 2017

volume

33

1 reference

27 June 2017

issue

5

1 reference

27 June 2017

page(s)

503-509

1 reference

Massively parallel single-cell RNA-seq for marker-free decomposition of tissues into cell types

27 June 2017

cites work

1 reference

A microfluidic device for preparing next generation DNA sequencing libraries and for automating other laboratory protocols that require one or more column chromatography steps

21 January 2018

1 reference

Single-cell sequencing-based technologies will revolutionize whole-organism science

21 January 2018

1 reference

Image-based transcriptomics in thousands of single human cells at single-molecule resolution

21 January 2018

1 reference

Highly multiplexed subcellular RNA sequencing in situ

21 January 2018

1 reference

Reconstruction of the mouse otocyst and early neuroblast lineage at single-cell resolution

21 January 2018

1 reference

A systematic analysis of the gap gene system in the moth midge Clogmia albipunctata

21 January 2018

1 reference

Conservation and evolutionary modifications of neuroblast expression patterns in insects

21 January 2018

1 reference

Ancient deuterostome origins of vertebrate brain signalling centres

21 January 2018

1 reference

Evolutionary crossroads in developmental biology: annelids

21 January 2018

1 reference

The evolution of cell types in animals: emerging principles from molecular studies

21 January 2018

1 reference

Ciliary photoreceptors with a vertebrate-type opsin in an invertebrate brain.

21 January 2018

1 reference

Conserved sensory-neurosecretory cell types in annelid and fish forebrain: insights into hypothalamus evolution

21 January 2018

1 reference

Profiling by image registration reveals common origin of annelid mushroom bodies and vertebrate pallium

21 January 2018

1 reference

Expression dynamics and protein localization of rhabdomeric opsins in Platynereis larvae

21 January 2018

1 reference

Larval body patterning and apical organs are conserved in animal evolution

21 January 2018

1 reference

Identifying cell types from spatially referenced single-cell expression datasets

21 January 2018

1 reference

Synthetic spike-in standards for RNA-seq experiments

21 January 2018

1 reference

Computational and analytical challenges in single-cell transcriptomics

21 January 2018

1 reference

Transcriptome in vivo analysis (TIVA) of spatially defined single cells in live tissue

21 January 2018

1 reference

SPEX2: automated concise extraction of spatial gene expression patterns from Fly embryo ISH images

21 January 2018

1 reference

Cell-type-based model explaining coexpression patterns of genes in the brain

21 January 2018

1 reference

Fast gapped-read alignment with Bowtie 2

21 January 2018

1 reference

HTSeq--a Python framework to work with high-throughput sequencing data

21 January 2018

1 reference

Phylogenetic analysis of the Wnt gene family. Insights from lophotrochozoan members

21 January 2018

1 reference

Vertebrate-type intron-rich genes in the marine annelid Platynereis dumerilii

21 January 2018

1 reference

The expression of a hunchback ortholog in the polychaete annelid Platynereis dumerilii suggests an ancestral role in mesoderm development and neurogenesis.

21 January 2018

1 reference

Molecular architecture of annelid nerve cord supports common origin of nervous system centralization in bilateria

21 January 2018

1 reference

atonal- and achaete-scute-related genes in the annelid Platynereis dumerilii: insights into the evolution of neural basic-Helix-Loop-Helix genes

21 January 2018

1 reference

Mechanism of phototaxis in marine zooplankton.

21 January 2018

1 reference

Orthologs of key vertebrate neural genes are expressed during neurogenesis in the annelid Platynereis dumerilii

21 January 2018

1 reference

Ancient animal microRNAs and the evolution of tissue identity

21 January 2018

1 reference

Hedgehog signaling regulates segment formation in the annelid Platynereis

21 January 2018

1 reference

The segmental pattern of otx, gbx, and Hox genes in the annelid Platynereis dumerilii.

21 January 2018

1 reference

Neuropeptides regulate swimming depth of Platynereis larvae

21 January 2018

1 reference

Antibodies against conserved amidated neuropeptide epitopes enrich the comparative neurobiology toolbox

21 January 2018

1 reference

Conserved MIP receptor-ligand pair regulates Platynereis larval settlement

21 January 2018

1 reference

Stable transgenesis in the marine annelid Platynereis dumerilii sheds new light on photoreceptor evolution

21 January 2018

1 reference

Global view of the evolution and diversity of metazoan neuropeptide signaling

21 January 2018

1 reference

Melatonin signaling controls circadian swimming behavior in marine zooplankton.

21 January 2018

1 reference

Cellular resolution expression profiling using confocal detection of NBT/BCIP precipitate by reflection microscopy

21 January 2018

1 reference

Fiji: an open-source platform for biological-image analysis

21 January 2018

1 reference

Whole-body gene expression pattern registration in Platynereis larvae

21 January 2018

1 reference

Development of pigment-cup eyes in the polychaete Platynereis dumerilii and evolutionary conservation of larval eyes in Bilateria.

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25867922

12 December 2020

inferred from PubMed ID database lookup

Fluorescent two-color whole mount in situ hybridization in Platynereis dumerilii (Polychaeta, Annelida), an emerging marine molecular model for evolution and development

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25867922

12 December 2020

inferred from PubMed ID database lookup

Spatial reconstruction of single-cell gene expression data

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25867922

12 December 2020

inferred from PubMed ID database lookup

Identifiers

DOI

10.1038/NBT.3209

1 reference

release_7qlxxyxezramlcv4pkvluo7r5e

27 June 2017

Fatcat ID

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/7qlxxyxezramlcv4pkvluo7r5e

24 November 2022

mapped directly with Wikidata item

1 reference