(Q30935846)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25887114%20AND%20SRC:MED&resulttype=core&format=json

5 March 2020

title

Cell-composition effects in the analysis of DNA methylation array data: a mathematical perspective (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25887114%20AND%20SRC:MED&resulttype=core&format=json

5 March 2020

0 references

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25887114%20AND%20SRC:MED&resulttype=core&format=json

5 March 2020

Carmen Marsit

series ordinal

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25887114%20AND%20SRC:MED&resulttype=core&format=json

5 March 2020

3

John K Wiencke

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25887114%20AND%20SRC:MED&resulttype=core&format=json

5 March 2020

author name string

Karl T Kelsey

series ordinal

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25887114%20AND%20SRC:MED&resulttype=core&format=json

5 March 2020

publication date

21 March 2015

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25887114%20AND%20SRC:MED&resulttype=core&format=json

5 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25887114%20AND%20SRC:MED&resulttype=core&format=json

5 March 2020

volume

16

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25887114%20AND%20SRC:MED&resulttype=core&format=json

5 March 2020

page(s)

95

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25887114%20AND%20SRC:MED&resulttype=core&format=json

Creative Commons Attribution 4.0 International

5 March 2020

copyright license

start time

21 March 2015

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

describes a project that uses

limma

object named as

limma

2 references

22 June 2022

https://europepmc.org/article/PMC/4392865

based on heuristic

inferred from PubMed Central ID database lookup

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

exact match

https://scigraph.springernature.com/pub.10.1186/s12859-015-0527-y

0 references

cites work

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Methylome analysis identifies a Wilms tumor epigenetic biomarker detectable in blood

21 June 2018

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21 June 2018

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The dynamics of DNA methylation covariation patterns in carcinogenesis.

21 June 2018

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Sensing cellular states--signaling to chromatin pathways targeting Polycomb and Trithorax group function.

21 June 2018

1 reference

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21 June 2018

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DNA methylation and body-mass index: a genome-wide analysis

21 June 2018

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Effect of prenatal arsenic exposure on DNA methylation and leukocyte subpopulations in cord blood.

21 June 2018

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Accounting for cellular heterogeneity is critical in epigenome-wide association studies

21 June 2018

1 reference

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Reference-free cell mixture adjustments in analysis of DNA methylation data

21 June 2018

1 reference

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Recommendations for the design and analysis of epigenome-wide association studies

21 June 2018

1 reference

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Differential DNA methylation in umbilical cord blood of infants exposed to low levels of arsenic in utero.

21 June 2018

1 reference

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Epigenetic control of cytokine gene expression: regulation of the TNF/LT locus and T helper cell differentiation

21 June 2018

1 reference

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Occupying Chromatin: Polycomb Mechanisms for Getting to Genomic Targets, Stopping Transcriptional Traffic, and Staying Put

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4392865

A cell epigenotype specific model for the correction of brain cellular heterogeneity bias and its application to age, brain region and major depression

21 June 2018

1 reference

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Epigenome-wide association data implicate DNA methylation as an intermediary of genetic risk in rheumatoid arthritis

21 June 2018

1 reference

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Discovery of cross-reactive probes and polymorphic CpGs in the Illumina Infinium HumanMethylation450 microarray

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4392865

Decreased NK cells in patients with head and neck cancer determined in archival DNA.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4392865

450K epigenome-wide scan identifies differential DNA methylation in newborns related to maternal smoking during pregnancy

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4392865

Differential DNA methylation in purified human blood cells: implications for cell lineage and studies on disease susceptibility

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4392865

Peripheral blood immune cell methylation profiles are associated with nonhematopoietic cancers

21 June 2018

1 reference

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DNA methylation arrays as surrogate measures of cell mixture distribution

21 June 2018

1 reference

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NLRC5 regulates MHC class I antigen presentation in host defense against intracellular pathogens

21 June 2018

1 reference

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Peripheral blood DNA methylation profiles are indicative of head and neck squamous cell carcinoma: an epigenome-wide association study

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4392865

The dynamics and prognostic potential of DNA methylation changes at stem cell gene loci in women's cancer

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4392865

Coordinated changes in AHRR methylation in lymphoblasts and pulmonary macrophages from smokers

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4392865

DNA methylation array analysis identifies profiles of blood-derived DNA methylation associated with bladder cancer.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4392865

The Polycomb complex PRC2 and its mark in life

21 June 2018

1 reference

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Cutting edge: NLRC5-dependent activation of the inflammasome

21 June 2018

1 reference

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Comprehensive methylome map of lineage commitment from haematopoietic progenitors

21 June 2018

1 reference

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Maintaining cell identity through global control of genomic organization

21 June 2018

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DNA methylation as a biomarker for cardiovascular disease risk

21 June 2018

1 reference

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An epigenetic signature in peripheral blood predicts active ovarian cancer

21 June 2018

1 reference

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Aging and environmental exposures alter tissue-specific DNA methylation dependent upon CpG island context

21 June 2018

1 reference

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Model-based clustering of DNA methylation array data: a recursive-partitioning algorithm for high-dimensional data arising as a mixture of beta distributions

21 June 2018

1 reference

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Capturing heterogeneity in gene expression studies by surrogate variable analysis

21 June 2018

1 reference

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Inflammation and breast cancer. Balancing immune response: crosstalk between adaptive and innate immune cells during breast cancer progression

21 June 2018

1 reference

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Smoking, alcohol and gastric cancer risk in Korean men: the National Health Insurance Corporation Study

21 June 2018

1 reference

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Polycomb-mediated methylation on Lys27 of histone H3 pre-marks genes for de novo methylation in cancer

21 June 2018

1 reference

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Distinct cellular responses differentiating alcohol- and hepatitis C virus-induced liver cirrhosis.

21 June 2018

1 reference

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Suz12 binds to silenced regions of the genome in a cell-type-specific manner

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4392865

Control of developmental regulators by Polycomb in human embryonic stem cells

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4392865

Genome-wide mapping of Polycomb target genes unravels their roles in cell fate transitions

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4392865

Evidence for a local immune response in atherosclerosis. CD4+ T cells infiltrate lesions of apolipoprotein-E-deficient mice

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4392865

DNA methylation and epigenetic control of cellular differentiation.

21 June 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12859-015-0527-Y

Epigenome-wide association studies without the need for cell-type composition

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12859-015-0527-Y

Independent surrogate variable analysis to deconvolve confounding factors in large-scale microarray profiling studies.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12859-015-0527-Y

Recruited vs. nonrecruited molecular signatures of brown, "brite," and white adipose tissues.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12859-015-0527-Y

Differential variability improves the identification of cancer risk markers in DNA methylation studies profiling precursor cancer lesions.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12859-015-0527-Y

DNA methylation map of human atherosclerosis

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12859-015-0527-Y

Methylation subtypes and large-scale epigenetic alterations in gastric cancer

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4392865

Inhibition of AP-1 transcription factor causes blockade of multiple signal transduction pathways and inhibits breast cancer growth

25 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25887114

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Early human atherosclerosis: accumulation of lipid and proteoglycans in intimal thickenings followed by macrophage infiltration

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25887114

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/S12859-015-0527-Y

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25887114%20AND%20SRC:MED&resulttype=core&format=json

journals/bmcbi/HousemanKWM15

5 March 2020

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25887114%20AND%20SRC:MED&resulttype=core&format=json

5 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25887114%20AND%20SRC:MED&resulttype=core&format=json