(Q30969610)

27 June 2017

Fold recognition and accurate query-template alignment by a combination of PSI-BLAST and threading (English)

1 reference

27 June 2017

Shan Y

1

1 reference

27 June 2017

Wang G

series ordinal

2

1 reference

27 June 2017

Zhou HX

series ordinal

3

1 reference

27 June 2017

language of work or name

English

0 references

publication date

1 January 2001

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27 June 2017

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27 June 2017

42

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27 June 2017

1

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27 June 2017

23-37

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A Method to Identify Protein Sequences That Fold into a Known Three-Dimensional Structure

27 June 2017

1 reference

https://api.crossref.org/works/10.1002%2F1097-0134%2820010101%2942%3A1%3C23%3A%3AAID-PROT40%3E3.0.CO%3B2-K

A new approach to protein fold recognition

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F1097-0134%2820010101%2942%3A1%3C23%3A%3AAID-PROT40%3E3.0.CO%3B2-K

Sequence-structure matching in globular proteins: application to supersecondary and tertiary structure determination

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F1097-0134%2820010101%2942%3A1%3C23%3A%3AAID-PROT40%3E3.0.CO%3B2-K

An empirical energy function for threading protein sequence through the folding motif

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F1097-0134%2820010101%2942%3A1%3C23%3A%3AAID-PROT40%3E3.0.CO%3B2-K

Progress in fold recognition.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F1097-0134%2820010101%2942%3A1%3C23%3A%3AAID-PROT40%3E3.0.CO%3B2-K

Global optimum protein threading with gapped alignment and empirical pair score functions.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F1097-0134%2820010101%2942%3A1%3C23%3A%3AAID-PROT40%3E3.0.CO%3B2-K

A 3D-1D substitution matrix for protein fold recognition that includes predicted secondary structure of the sequence

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F1097-0134%2820010101%2942%3A1%3C23%3A%3AAID-PROT40%3E3.0.CO%3B2-K

Protein fold recognition by prediction-based threading

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F1097-0134%2820010101%2942%3A1%3C23%3A%3AAID-PROT40%3E3.0.CO%3B2-K

Protein structure: what is it possible to predict now?

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F1097-0134%2820010101%2942%3A1%3C23%3A%3AAID-PROT40%3E3.0.CO%3B2-K

A measure of success in fold recognition

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F1097-0134%2820010101%2942%3A1%3C23%3A%3AAID-PROT40%3E3.0.CO%3B2-K

Progress in protein structure prediction

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F1097-0134%2820010101%2942%3A1%3C23%3A%3AAID-PROT40%3E3.0.CO%3B2-K

Fold and function predictions for Mycoplasma genitalium proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F1097-0134%2820010101%2942%3A1%3C23%3A%3AAID-PROT40%3E3.0.CO%3B2-K

Fold prediction by a hierarchy of sequence, threading, and modeling methods

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F1097-0134%2820010101%2942%3A1%3C23%3A%3AAID-PROT40%3E3.0.CO%3B2-K

A brighter future for protein structure prediction

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F1097-0134%2820010101%2942%3A1%3C23%3A%3AAID-PROT40%3E3.0.CO%3B2-K

Progress in protein structure prediction: assessment of CASP3.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F1097-0134%2820010101%2942%3A1%3C23%3A%3AAID-PROT40%3E3.0.CO%3B2-K

GenTHREADER: an efficient and reliable protein fold recognition method for genomic sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F1097-0134%2820010101%2942%3A1%3C23%3A%3AAID-PROT40%3E3.0.CO%3B2-K

Combination of threading potentials and sequence profiles improves fold recognition.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F1097-0134%2820010101%2942%3A1%3C23%3A%3AAID-PROT40%3E3.0.CO%3B2-K

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F1097-0134%2820010101%2942%3A1%3C23%3A%3AAID-PROT40%3E3.0.CO%3B2-K

Homology-based fold predictions for Mycoplasma genitalium proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F1097-0134%2820010101%2942%3A1%3C23%3A%3AAID-PROT40%3E3.0.CO%3B2-K

Structural assignments to the Mycoplasma genitalium proteins show extensive gene duplications and domain rearrangements

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F1097-0134%2820010101%2942%3A1%3C23%3A%3AAID-PROT40%3E3.0.CO%3B2-K

Benchmarking PSI-BLAST in genome annotation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F1097-0134%2820010101%2942%3A1%3C23%3A%3AAID-PROT40%3E3.0.CO%3B2-K

Dali/FSSP classification of three-dimensional protein folds

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F1097-0134%2820010101%2942%3A1%3C23%3A%3AAID-PROT40%3E3.0.CO%3B2-K

Identification of common molecular subsequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F1097-0134%2820010101%2942%3A1%3C23%3A%3AAID-PROT40%3E3.0.CO%3B2-K

Protein fold recognition using sequence-derived predictions

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F1097-0134%2820010101%2942%3A1%3C23%3A%3AAID-PROT40%3E3.0.CO%3B2-K

Amino acid substitution matrices from protein blocks

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F1097-0134%2820010101%2942%3A1%3C23%3A%3AAID-PROT40%3E3.0.CO%3B2-K

Protein secondary structure prediction based on position-specific scoring matrices

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F1097-0134%2820010101%2942%3A1%3C23%3A%3AAID-PROT40%3E3.0.CO%3B2-K

Exhaustive matching of the entire protein sequence database

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F1097-0134%2820010101%2942%3A1%3C23%3A%3AAID-PROT40%3E3.0.CO%3B2-K

Enhanced genome annotation using structural profiles in the program 3D-PSSM

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F1097-0134%2820010101%2942%3A1%3C23%3A%3AAID-PROT40%3E3.0.CO%3B2-K

Comparing genomes in terms of protein structure: surveys of a finite parts list.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F1097-0134%2820010101%2942%3A1%3C23%3A%3AAID-PROT40%3E3.0.CO%3B2-K

Advances in structural genomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F1097-0134%2820010101%2942%3A1%3C23%3A%3AAID-PROT40%3E3.0.CO%3B2-K

Protein structure Prediction

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F1097-0134%2820010101%2942%3A1%3C23%3A%3AAID-PROT40%3E3.0.CO%3B2-K

21 January 2018

Into the black of night

1 reference

https://api.crossref.org/works/10.1002%2F1097-0134%2820010101%2942%3A1%3C23%3A%3AAID-PROT40%3E3.0.CO%3B2-K

Threading with explicit models for evolutionary conservation of structure and sequence

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F1097-0134%2820010101%2942%3A1%3C23%3A%3AAID-PROT40%3E3.0.CO%3B2-K

Comparative modeling of CASP3 targets using PSI-BLAST and SCWRL

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F1097-0134%2820010101%2942%3A1%3C23%3A%3AAID-PROT40%3E3.0.CO%3B2-K

Evaluation of threading specificity and accuracy

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F1097-0134%2820010101%2942%3A1%3C23%3A%3AAID-PROT40%3E3.0.CO%3B2-K

10.1002/1097-0134(20010101)42:1<23::AID-PROT40>3.0.CO;2-K

21 January 2018

Identifiers

DOI

1 reference

27 June 2017

1 reference