(Q30427655)

21 June 2017

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title

Progress in protein structure prediction (English)

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protein structure prediction

21 June 2017

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author name string

Jones DT

series ordinal

1

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21 June 2017

1 June 1997

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Current Opinion in Structural Biology

21 June 2017

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21 June 2017

7

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21 June 2017

377-387

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21 June 2017

3

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21 June 2017

Into the black of night

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2897%2980055-3

7 January 2021

Structure prediction: folding proteins by pattern recognition

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2897%2980055-3

7 January 2021

A critical assessment of comparative molecular modeling of tertiary structures of proteins

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2897%2980055-3

7 January 2021

ProMod and Swiss-Model: Internet-based tools for automated comparative protein modelling

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2897%2980055-3

7 January 2021

A search for the most stable folds of protein chains

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2897%2980055-3

7 January 2021

A Method to Identify Protein Sequences That Fold into a Known Three-Dimensional Structure

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2897%2980055-3

7 January 2021

A new approach to protein fold recognition

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2897%2980055-3

7 January 2021

Sequence-structure matching in globular proteins: application to supersecondary and tertiary structure determination

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2897%2980055-3

7 January 2021

An empirical energy function for threading protein sequence through the folding motif

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2897%2980055-3

7 January 2021

Prediction of protein structure by evaluation of sequence-structure fitness. Aligning sequences to contact profiles derived from three-dimensional structures

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https://api.crossref.org/works/10.1016%2FS0959-440X%2897%2980055-3

7 January 2021

Recognition of distantly related proteins through energy calculations

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https://api.crossref.org/works/10.1016%2FS0959-440X%2897%2980055-3

7 January 2021

Development of pseudoenergy potentials for assessing protein 3-D-1-D compatibility and detecting weak homologies

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2897%2980055-3

7 January 2021

Progress in fold recognition.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2897%2980055-3

7 January 2021

Global optimum protein threading with gapped alignment and empirical pair score functions.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2897%2980055-3

7 January 2021

Threading a database of protein cores

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https://api.crossref.org/works/10.1016%2FS0959-440X%2897%2980055-3

7 January 2021

Fold recognition and ab initio structure predictions using hidden Markov models and beta-strand pair potentials

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2897%2980055-3

7 January 2021

Search for the most stable folds of protein chains: I. Application of a self-consistent molecular field theory to a problem of protein three-dimensional structure prediction

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2897%2980055-3

7 January 2021

Search for the most stable folds of protein chains: II. Computation of stable architectures of beta-proteins using a self-consistent molecular field theory.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2897%2980055-3

7 January 2021

Protein fold recognition using sequence-derived predictions

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https://api.crossref.org/works/10.1016%2FS0959-440X%2897%2980055-3

7 January 2021

Multiple sequence information for threading algorithms

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2897%2980055-3

7 January 2021

Protein fold recognition by mapping predicted secondary structures.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2897%2980055-3

7 January 2021

Evaluation of threading specificity and accuracy

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https://api.crossref.org/works/10.1016%2FS0959-440X%2897%2980055-3

7 January 2021

Potential energy functions for threading

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https://api.crossref.org/works/10.1016%2FS0959-440X%2897%2980055-3

7 January 2021

Identification of native protein folds amongst a large number of incorrect models. The calculation of low energy conformations from potentials of mean force

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2897%2980055-3

7 January 2021

Contact potential that recognizes the correct folding of globular proteins

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2897%2980055-3

7 January 2021

Factors influencing the ability of knowledge-based potentials to identify native sequence-structure matches.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2897%2980055-3

7 January 2021

Factors affecting the ability of energy functions to discriminate correct from incorrect folds

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2897%2980055-3

7 January 2021

Residue-residue potentials with a favorable contact pair term and an unfavorable high packing density term, for simulation and threading.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2897%2980055-3

7 January 2021

An iterative method for extracting energy-like quantities from protein structures.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2897%2980055-3

7 January 2021

Energy functions that discriminate X-ray and near native folds from well-constructed decoys

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2897%2980055-3

7 January 2021

Calculation of conformational ensembles from potentials of mean force. An approach to the knowledge-based prediction of local structures in globular proteins.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2897%2980055-3

7 January 2021

Why do protein architectures have Boltzmann-like statistics?

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2897%2980055-3

7 January 2021

Statistical potentials extracted from protein structures: how accurate are they?

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2897%2980055-3

7 January 2021

How to derive a protein folding potential? A new approach to an old problem

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2897%2980055-3

7 January 2021

Protein structure prediction by threading methods: evaluation of current techniques

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2897%2980055-3

7 January 2021

Protein fold recognition by threading: comparison of algorithms and analysis of results.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2897%2980055-3

7 January 2021

Crystal structure of CspA, the major cold shock protein of Escherichia coli

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2897%2980055-3

7 January 2021

The epidermolytic toxins are serine proteases

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2897%2980055-3

7 January 2021

Xylanase homology modeling using the inverse protein folding approach

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2897%2980055-3

7 January 2021

Assessment of protein fold predictions from sequence information: the predicted alpha/beta doubly wound fold of the von Willebrand factor type A domain is similar to its crystal structure

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2897%2980055-3

7 January 2021

The folding type of a protein is relevant to the amino acid composition

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2897%2980055-3

7 January 2021

Prediction of secondary structural content of proteins from their amino acid composition alone. I. New analytic vector decomposition methods

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2897%2980055-3

7 January 2021

Prediction of secondary structural content of proteins from their amino acid composition alone. II. The paradox with secondary structural class

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2897%2980055-3

7 January 2021

Protein secondary structure prediction

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2897%2980055-3

7 January 2021

Progress of 1D protein structure prediction at last

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2897%2980055-3

7 January 2021

Improvement of protein secondary structure prediction using binary word encoding

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2897%2980055-3

7 January 2021

Identification and application of the concepts important for accurate and reliable protein secondary structure prediction

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2897%2980055-3

7 January 2021

Using Evolutionary Trees in Protein Secondary Structure Prediction and Other Comparative Sequence Analyses

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2897%2980055-3

7 January 2021

The use of amino acid patterns of classified helices and strands in secondary structure prediction.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2897%2980055-3

7 January 2021

GOR method for predicting protein secondary structure from amino acid sequence.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2897%2980055-3

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2897%2980055-3

7 January 2021

Can three-dimensional contacts in protein structures be predicted by analysis of correlated mutations?

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2897%2980055-3

7 January 2021

Compensating changes in protein multiple sequence alignments

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2897%2980055-3

7 January 2021

The prediction of protein contacts from multiple sequence alignments

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2897%2980055-3

7 January 2021

Monte Carlo simulations of protein folding. II. Application to protein A, ROP, and crambin

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2897%2980055-3

7 January 2021

Lattice model simulations of polypeptide chain folding

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2897%2980055-3

7 January 2021

A method for alpha-helical integral membrane protein fold prediction.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2897%2980055-3

7 January 2021

Monte Carlo simulations of protein folding. I. Lattice model and interaction scheme.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2897%2980055-3

7 January 2021

Does compactness induce secondary structure in proteins? A study of poly-alanine chains computed by distance geometry

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2897%2980055-3

7 January 2021

Exploring conformational space with a simple lattice model for protein structure

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2897%2980055-3

7 January 2021

A test of lattice protein folding algorithms

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2897%2980055-3

7 January 2021

Principles of protein folding--a perspective from simple exact models.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2897%2980055-3

7 January 2021

The complexity and accuracy of discrete state models of protein structure

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https://api.crossref.org/works/10.1016%2FS0959-440X%2897%2980055-3

7 January 2021

Domains in folding of model proteins

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2897%2980055-3

7 January 2021

Accurate general method for lattice approximation of three-dimensional structure of a chain molecule

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2897%2980055-3

7 January 2021

Exhaustive enumeration of protein conformations using experimental restraints

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2897%2980055-3

7 January 2021

Lattice models of protein folding

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2897%2980055-3

7 January 2021

Does a backwardly read protein sequence have a unique native state?

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2897%2980055-3

7 January 2021

Folding simulations and computer redesign of protein A three-helix bundle motifs

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2897%2980055-3

7 January 2021

Emergence of Preferred Structures in a Simple Model of Protein Folding

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2897%2980055-3

7 January 2021

Improved genetic algorithm for the protein folding problem by use of a Cartesian combination operator

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2897%2980055-3

7 January 2021

Building self-avoiding lattice models of proteins using a self-consistent field optimization.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2897%2980055-3

7 January 2021

A fast conformational search strategy for finding low energy structures of model proteins

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2897%2980055-3

7 January 2021

MONSSTER: a method for folding globular proteins with a small number of distance restraints

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2897%2980055-3

7 January 2021

Folding the main chain of small proteins with the genetic algorithm.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2897%2980055-3

7 January 2021

A genetic algorithm that seeks native states of peptides and proteins

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2897%2980055-3

7 January 2021

Local moves: an efficient algorithm for simulation of protein folding.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2897%2980055-3

7 January 2021

A simple protein folding algorithm using a binary code and secondary structure constraints.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2897%2980055-3

7 January 2021

LINUS: a hierarchic procedure to predict the fold of a protein.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2897%2980055-3

7 January 2021

Ab initio structure prediction for small polypeptides and protein fragments using genetic algorithms.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2897%2980055-3

7 January 2021

Ab initio tertiary-fold prediction of helical and non-helical protein chains using a genetic algorithm.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2897%2980055-3

7 January 2021

Genetic algorithms for protein structure prediction

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2897%2980055-3

7 January 2021

Homology modelling by distance geometry

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2897%2980055-3

7 January 2021

10.1016/S0959-440X(97)80055-3

Identifiers

DOI

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21 June 2017

1 reference

PubMed ID

9204280