(Q37262313)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:8876187%20AND%20SRC:MED&resulttype=core&format=json

20 October 2019

title

An iterative method for extracting energy-like quantities from protein structures (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:8876187%20AND%20SRC:MED&resulttype=core&format=json

20 October 2019

0 references

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:8876187%20AND%20SRC:MED&resulttype=core&format=json

20 October 2019

2

K A Dill

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:8876187%20AND%20SRC:MED&resulttype=core&format=json

20 October 2019

language of work or name

English

0 references

publication date

1 October 1996

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:8876187%20AND%20SRC:MED&resulttype=core&format=json

Proceedings of the National Academy of Sciences of the United States of America

20 October 2019

published in

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:8876187%20AND%20SRC:MED&resulttype=core&format=json

20 October 2019

volume

93

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:8876187%20AND%20SRC:MED&resulttype=core&format=json

20 October 2019

page(s)

11628-11633

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:8876187%20AND%20SRC:MED&resulttype=core&format=json

20 October 2019

issue

21

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:8876187%20AND%20SRC:MED&resulttype=core&format=json

Energy functions that discriminate X-ray and near native folds from well-constructed decoys

20 October 2019

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=38109

Are proteins ideal mixtures of amino acids? Analysis of energy parameter sets

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=38109

An empirical energy function for threading protein sequence through the folding motif

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=38109

Reduced representation model of protein structure prediction: statistical potential and genetic algorithms

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=38109

Enlarged representative set of protein structures

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=38109

Exploring conformational space with a simple lattice model for protein structure

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=38109

Knowledge-based potentials for proteins

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=38109

A computer model to dynamically simulate protein folding: studies with crambin.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=38109

A Method to Identify Protein Sequences That Fold into a Known Three-Dimensional Structure

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=38109

A new approach to protein fold recognition

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=38109

Detection of native-like models for amino acid sequences of unknown three-dimensional structure in a data base of known protein conformations

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=38109

Structure-derived hydrophobic potential. Hydrophobic potential derived from X-ray structures of globular proteins is able to identify native folds

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=38109

Sequence-structure matching in globular proteins: application to supersecondary and tertiary structure determination

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=38109

Protein tertiary structure recognition using optimized Hamiltonians with local interactions

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=38109

The Protein Data Bank: a computer-based archival file for macromolecular structures

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=38109

Structure-derived potentials and protein simulations

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=38109

Medium- and long-range interaction parameters between amino acids for predicting three-dimensional structures of proteins

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=38109

Computer modeling of protein folding: conformational and energetic analysis of reduced and detailed protein models

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=38109

Calculation of conformational ensembles from potentials of mean force. An approach to the knowledge-based prediction of local structures in globular proteins.

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=38109

Contact potential that recognizes the correct folding of globular proteins

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=38109

Simulations of the folding of a globular protein.

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=38109

Statistical potentials extracted from protein structures: how accurate are they?

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=38109

Residue-residue potentials with a favorable contact pair term and an unfavorable high packing density term, for simulation and threading.

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=38109

Global optimum protein threading with gapped alignment and empirical pair score functions.

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=38109

Computer simulation of antibody binding specificity

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=38109

Monte Carlo simulations of protein folding. I. Lattice model and interaction scheme.

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=38109

Factors influencing the ability of knowledge-based potentials to identify native sequence-structure matches.

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=38109

Conformations of folded proteins in restricted spaces

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=38109

Correctly folded proteins make twice as many hydrophobic contacts

3 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/8876187

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

A potential function for conformational analysis of proteins

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/8876187

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identification of native protein folds amongst a large number of incorrect models. The calculation of low energy conformations from potentials of mean force

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/8876187

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1073/PNAS.93.21.11628

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:8876187%20AND%20SRC:MED&resulttype=core&format=json

20 October 2019

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:8876187%20AND%20SRC:MED&resulttype=core&format=json

20 October 2019

1 reference