Home
Random
Nearby
Log in
Settings
Donate
About Wikidata
Disclaimers
Search
(Q41052933)
Watch
English
Structure-derived potentials and protein simulations
scientific article
In more languages
edit
Statements
instance of
scholarly article
1 reference
stated in
Europe PubMed Central
PubMed ID
8728652
retrieved
26 September 2017
review article
1 reference
stated in
Europe PubMed Central
title
Structure-derived potentials and protein simulations
(English)
1 reference
stated in
Europe PubMed Central
PubMed ID
8728652
retrieved
26 September 2017
main subject
protein structure
0 references
author name string
Jernigan RL
series ordinal
1
1 reference
stated in
Europe PubMed Central
PubMed ID
8728652
retrieved
26 September 2017
Bahar I
series ordinal
2
1 reference
stated in
Europe PubMed Central
PubMed ID
8728652
retrieved
26 September 2017
publication date
1 April 1996
1 reference
stated in
Europe PubMed Central
PubMed ID
8728652
retrieved
26 September 2017
published in
Current Opinion in Structural Biology
1 reference
stated in
Europe PubMed Central
PubMed ID
8728652
retrieved
26 September 2017
volume
6
1 reference
stated in
Europe PubMed Central
PubMed ID
8728652
retrieved
26 September 2017
page(s)
195-209
1 reference
stated in
Europe PubMed Central
PubMed ID
8728652
retrieved
26 September 2017
issue
2
1 reference
stated in
Europe PubMed Central
PubMed ID
8728652
retrieved
26 September 2017
cites work
A simplified representation of protein conformations for rapid simulation of protein folding
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980075-3
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Medium- and long-range interaction parameters between amino acids for predicting three-dimensional structures of proteins
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980075-3
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Assessment of protein models with three-dimensional profiles
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980075-3
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Calculation of conformational ensembles from potentials of mean force. An approach to the knowledge-based prediction of local structures in globular proteins.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980075-3
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
A Method to Identify Protein Sequences That Fold into a Known Three-Dimensional Structure
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980075-3
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Identification of native protein folds amongst a large number of incorrect models. The calculation of low energy conformations from potentials of mean force
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980075-3
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
A new approach to protein fold recognition
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980075-3
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Structure-derived hydrophobic potential. Hydrophobic potential derived from X-ray structures of globular proteins is able to identify native folds
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980075-3
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Protein structure prediction based on statistical potential
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980075-3
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Reduced representation model of protein structure prediction: statistical potential and genetic algorithms
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980075-3
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Three-dimensional profiles from residue-pair preferences: identification of sequences with beta/alpha-barrel fold
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980075-3
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Development of pseudoenergy potentials for assessing protein 3-D-1-D compatibility and detecting weak homologies
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980075-3
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
An empirical energy function for threading protein sequence through the folding motif
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980075-3
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
An improved pair potential to recognize native protein folds
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980075-3
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
An evolutionary approach to folding small alpha-helical proteins that uses sequence information and an empirical guiding fitness function
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980075-3
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Predicting coiled coils by use of pairwise residue correlations
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980075-3
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Residue-residue potentials with a favorable contact pair term and an unfavorable high packing density term, for simulation and threading.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980075-3
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
An analysis of incorrectly folded protein models. Implications for structure predictions.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980075-3
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Criteria that discriminate between native proteins and incorrectly folded models
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980075-3
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Discriminating compact nonnative structures from the native structure of globular proteins
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980075-3
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Proteins with selected sequences fold into unique native conformation
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980075-3
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Kinetics of protein folding. A lattice model study of the requirements for folding to the native state.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980075-3
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Theoretical studies of protein folding and unfolding
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980075-3
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Using a hydrophobic contact potential to evaluate native and near-native folds generated by molecular dynamics simulations
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980075-3
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
The Protein Data Bank: a computer-based archival file for macromolecular structures
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980075-3
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Enlarged representative set of protein structures
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980075-3
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Conformations of folded proteins in restricted spaces
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980075-3
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
A new substitution matrix for protein sequence searches based on contact frequencies in protein structures
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980075-3
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Protein stability for single substitution mutants and the extent of local compactness in the denatured state
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980075-3
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Ranking potential binding peptides to MHC molecules by a computational threading approach
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980075-3
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
A preference-based free-energy parameterization of enzyme-inhibitor binding. Applications to HIV-1-protease inhibitor design
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980075-3
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Hydrophobic potential by pairwise surface area sum.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980075-3
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Are proteins ideal mixtures of amino acids? Analysis of energy parameter sets
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980075-3
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Knowledge-based potentials for proteins
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980075-3
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Statistical potentials extracted from protein structures: how accurate are they?
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980075-3
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Energy functions that discriminate X-ray and near native folds from well-constructed decoys
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980075-3
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Factors influencing the ability of knowledge-based potentials to identify native sequence-structure matches.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980075-3
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Contact potential that recognizes the correct folding of globular proteins
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980075-3
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
A new protein folding recognition potential function
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980075-3
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Progress in fold recognition.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980075-3
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
From structure to sequence and back again.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980075-3
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Optimal sequence selection in proteins of known structure by simulated evolution
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980075-3
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Computer simulation of protein folding
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980075-3
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Sequence-structure matching in globular proteins: application to supersecondary and tertiary structure determination
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980075-3
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Funnels, pathways, and the energy landscape of protein folding: a synthesis
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980075-3
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Prediction of quaternary structure of coiled coils. Application to mutants of the GCN4 leucine zipper
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980075-3
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Exploring conformational space with a simple lattice model for protein structure
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980075-3
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
A simplified amino acid potential for use in structure predictions of proteins.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980075-3
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Principles of protein folding--a perspective from simple exact models.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980075-3
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Side-chain entropy and packing in proteins
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980075-3
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
How does a protein fold?
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980075-3
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Cooperative structural transitions induced by non-homogeneous intramolecular interactions in compact globular proteins
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980075-3
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Stabilization of intermediate density states in globular proteins by homogeneous intramolecular attractive interactions
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980075-3
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Forces of tertiary structural organization in globular proteins
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980075-3
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
The complexity and accuracy of discrete state models of protein structure
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980075-3
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Prediction of the folding pathways and structure of the GCN4 leucine zipper
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980075-3
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
An algorithm to generate low-resolution protein tertiary structures from knowledge of secondary structure
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980075-3
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Computer modeling of protein folding: conformational and energetic analysis of reduced and detailed protein models
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980075-3
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Atomic environment energies in proteins defined from statistics of accessible and contact surface areas
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980075-3
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
A new computational model for protein folding based on atomic solvation
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980075-3
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Folding protein alpha-carbon chains into compact forms by Monte Carlo methods
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980075-3
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Lattice model simulations of polypeptide chain folding
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980075-3
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Monte Carlo simulations of protein folding. I. Lattice model and interaction scheme.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980075-3
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Monte Carlo simulations of protein folding. II. Application to protein A, ROP, and crambin
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980075-3
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
LINUS: a hierarchic procedure to predict the fold of a protein.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980075-3
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
A model of myoglobin self-organization
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980075-3
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Pseudodihedrals: simplified protein backbone representation with knowledge-based energy
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980075-3
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Prediction of protein backbone conformation based on seven structure assignments. Influence of local interactions
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980075-3
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Pseudotorsional OCCO backbone angle as a single descriptor of protein secondary structure
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980075-3
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Context is a major determinant of β-sheet propensity
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980075-3
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
The origins of protein secondary structure. Effects of packing density and hydrogen bonding studied by a fast conformational search
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980075-3
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
SIRIUS. An automated method for the analysis of the preferred packing arrangements between protein groups.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980075-3
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Tertiary templates for proteins. Use of packing criteria in the enumeration of allowed sequences for different structural classes
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980075-3
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
A buried polar interaction imparts structural uniqueness in a designed heterodimeric coiled coil
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980075-3
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Consistencies of individual DNA base-amino acid interactions in structures and sequences
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980075-3
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Recognizing native folds by the arrangement of hydrophobic and polar residues
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980075-3
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Identifiers
DOI
10.1016/S0959-440X(96)80075-3
1 reference
stated in
Europe PubMed Central
PubMed ID
8728652
retrieved
26 September 2017
PubMed ID
8728652
1 reference
stated in
Europe PubMed Central
PubMed ID
8728652
retrieved
26 September 2017
Sitelinks
Wikipedia
(0 entries)
edit
Wikibooks
(0 entries)
edit
Wikinews
(0 entries)
edit
Wikiquote
(0 entries)
edit
Wikisource
(0 entries)
edit
Wikiversity
(0 entries)
edit
Wikivoyage
(0 entries)
edit
Wiktionary
(0 entries)
edit
Multilingual sites
(0 entries)
edit