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Potential energy functions for threading
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instance of
scholarly article
1 reference
stated in
Europe PubMed Central
PubMed ID
8728653
retrieved
26 September 2017
review article
1 reference
stated in
Europe PubMed Central
title
Potential energy functions for threading
(English)
1 reference
stated in
Europe PubMed Central
PubMed ID
8728653
retrieved
26 September 2017
main subject
potential energy
0 references
author
Janet Thornton
series ordinal
2
1 reference
stated in
Europe PubMed Central
PubMed ID
8728653
retrieved
26 September 2017
David Tudor Jones
series ordinal
1
object named as
Jones DT
1 reference
stated in
Europe PubMed Central
PubMed ID
8728653
retrieved
26 September 2017
publication date
1 April 1996
1 reference
stated in
Europe PubMed Central
PubMed ID
8728653
retrieved
26 September 2017
published in
Current Opinion in Structural Biology
1 reference
stated in
Europe PubMed Central
PubMed ID
8728653
retrieved
26 September 2017
volume
6
1 reference
stated in
Europe PubMed Central
PubMed ID
8728653
retrieved
26 September 2017
page(s)
210-216
1 reference
stated in
Europe PubMed Central
PubMed ID
8728653
retrieved
26 September 2017
issue
2
1 reference
stated in
Europe PubMed Central
PubMed ID
8728653
retrieved
26 September 2017
cites work
A Method to Identify Protein Sequences That Fold into a Known Three-Dimensional Structure
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980076-5
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7 January 2021
based on heuristic
inferred from DOI database lookup
Evaluation of protein models by atomic solvation preference.
1 reference
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Crossref
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7 January 2021
based on heuristic
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Local polarity analysis: a sensitive method that discriminates between native proteins and incorrectly folded models
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980076-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Identification of native protein folds amongst a large number of incorrect models. The calculation of low energy conformations from potentials of mean force
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980076-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
A new approach to protein fold recognition
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980076-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Detection of native-like models for amino acid sequences of unknown three-dimensional structure in a data base of known protein conformations
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980076-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Sequence-structure matching in globular proteins: application to supersecondary and tertiary structure determination
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980076-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Contact potential that recognizes the correct folding of globular proteins
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980076-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
An empirical energy function for threading protein sequence through the folding motif
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980076-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Prediction of protein structure by evaluation of sequence-structure fitness. Aligning sequences to contact profiles derived from three-dimensional structures
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980076-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Recognition of distantly related proteins through energy calculations
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980076-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Environment-specific amino acid substitution tables: tertiary templates and prediction of protein folds
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980076-5
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7 January 2021
based on heuristic
inferred from DOI database lookup
Progress of 1D protein structure prediction at last
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980076-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Factors influencing the ability of knowledge-based potentials to identify native sequence-structure matches.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980076-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Development of pseudoenergy potentials for assessing protein 3-D-1-D compatibility and detecting weak homologies
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980076-5
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7 January 2021
based on heuristic
inferred from DOI database lookup
Detection of protein 3D-1D compatibility characterized by the evaluation of side-chain packing and electrostatic interactions
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980076-5
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7 January 2021
based on heuristic
inferred from DOI database lookup
Statistical potentials extracted from protein structures: how accurate are they?
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980076-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Structural features can be unconserved in proteins with similar folds. An analysis of side-chain to side-chain contacts secondary structure and accessibility.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980076-5
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7 January 2021
based on heuristic
inferred from DOI database lookup
Recognizing native folds by the arrangement of hydrophobic and polar residues
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980076-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Polar and nonpolar atomic environments in the protein core: implications for folding and binding
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980076-5
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7 January 2021
based on heuristic
inferred from DOI database lookup
Solvation energy in protein folding and binding
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980076-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Atomic environment energies in proteins defined from statistics of accessible and contact surface areas
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980076-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
An analysis of incorrectly folded protein models. Implications for structure predictions.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980076-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Criteria that discriminate between native proteins and incorrectly folded models
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980076-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Discriminating compact nonnative structures from the native structure of globular proteins
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980076-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Calculation of conformational ensembles from potentials of mean force. An approach to the knowledge-based prediction of local structures in globular proteins.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980076-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Why do protein architectures have Boltzmann-like statistics?
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980076-5
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7 January 2021
based on heuristic
inferred from DOI database lookup
Comparison of conformational characteristics in structurally similar protein pairs
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980076-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Protein superfamilies and domain superfolds
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980076-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Conformation of peptide fragments of proteins in aqueous solution: implications for initiation of protein folding
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980076-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Folding of peptide fragments comprising the complete sequence of proteins. Models for initiation of protein folding. I. Myohemerythrin
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980076-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Folding of peptide fragments comprising the complete sequence of proteins
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980076-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Kinetics of folding of the all-beta sheet protein interleukin-1 beta
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980076-5
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7 January 2021
based on heuristic
inferred from DOI database lookup
Nucleation, rapid folding, and globular intrachain regions in proteins
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980076-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Protein structure prediction by threading methods: evaluation of current techniques
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980076-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Successful protein fold recognition by optimal sequence threading validated by rigorous blind testing
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980076-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Progress in fold recognition.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980076-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
LINUS: a hierarchic procedure to predict the fold of a protein.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980076-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Ab initio structure prediction for small polypeptides and protein fragments using genetic algorithms.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0959-440X%2896%2980076-5
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Identifiers
DOI
10.1016/S0959-440X(96)80076-5
1 reference
stated in
Europe PubMed Central
PubMed ID
8728653
retrieved
26 September 2017
PubMed ID
8728653
1 reference
stated in
Europe PubMed Central
PubMed ID
8728653
retrieved
26 September 2017
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