(Q30981671)

28 June 2017

New local potential useful for genome annotation and 3D modeling (English)

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28 June 2017

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2

Fred E Cohen

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28 June 2017

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John Marc Chandonia

1

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PubMed ID

12972255

28 June 2017

language of work or name

English

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publication date

1 September 2003

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Journal of Molecular Biology

28 June 2017

16

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based on heuristic

inferred from page(s)

published in

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28 June 2017

332

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28 June 2017

4

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28 June 2017

835-850

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A Method to Identify Protein Sequences That Fold into a Known Three-Dimensional Structure

28 June 2017

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900990-2

Database of homology-derived protein structures and the structural meaning of sequence alignment

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900990-2

Basic local alignment search tool

7 January 2021

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https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900990-2

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900990-2

Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900990-2

A new approach to protein fold recognition

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900990-2

GenTHREADER: an efficient and reliable protein fold recognition method for genomic sequences

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900990-2

Combination of threading potentials and sequence profiles improves fold recognition.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900990-2

Enhanced genome annotation using structural profiles in the program 3D-PSSM

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900990-2

Fold recognition and accurate query-template alignment by a combination of PSI-BLAST and threading

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900990-2

Within the twilight zone: a sensitive profile-profile comparison tool based on information theory.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900990-2

Advances in structural genomics

7 January 2021

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https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900990-2

Target selection for structural genomics

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900990-2

Comparative protein modelling by satisfaction of spatial restraints

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900990-2

Advances in comparative protein-structure modelling

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900990-2

Calculation of conformational ensembles from potentials of mean force. An approach to the knowledge-based prediction of local structures in globular proteins.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900990-2

Prediction of protein secondary structure at better than 70% accuracy

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900990-2

Protein fold recognition using sequence-derived predictions

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900990-2

Multiple sequence information for threading algorithms

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900990-2

Protein fold recognition by prediction-based threading

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900990-2

Measures of threading specificity and accuracy

7 January 2021

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https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900990-2

FUGUE: sequence-structure homology recognition using environment-specific substitution tables and structure-dependent gap penalties

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900990-2

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900990-2

SCOP: a structural classification of proteins database for the investigation of sequences and structures

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900990-2

LiveBench-2: large-scale automated evaluation of protein structure prediction servers.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900990-2

EVA: Evaluation of protein structure prediction servers.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900990-2

Pcons: a neural-network-based consensus predictor that improves fold recognition.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900990-2

3D-Jury: a simple approach to improve protein structure predictions

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900990-2

SSAP: sequential structure alignment program for protein structure comparison

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900990-2

MaxSub: an automated measure for the assessment of protein structure prediction quality.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900990-2

CATH--a hierarchic classification of protein domain structures

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900990-2

The Minimal Gene Complement of Mycoplasma genitalium

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900990-2

Benchmarking PSI-BLAST in genome annotation.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900990-2

Evolution of function in protein superfamilies, from a structural perspective.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900990-2

The genome sequence of Drosophila melanogaster

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900990-2

The Sequence of the Human Genome

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900990-2

Rational structural genomics: affirmative action for ORFans and the growth in our structural knowledge.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900990-2

The 26S proteasome: a molecular machine designed for controlled proteolysis

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900990-2

A surface of minimum area metric for the structural comparison of proteins

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900990-2

The ASTRAL compendium for protein structure and sequence analysis

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900990-2

ASTRAL compendium enhancements

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900990-2

A general method applicable to the search for similarities in the amino acid sequence of two proteins

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900990-2

Iterated profile searches with PSI-BLAST--a tool for discovery in protein databases

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900990-2

`` Direct Search'' Solution of Numerical and Statistical Problems

7 January 2021

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https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900990-2

Progress in fold recognition.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900990-2

7 January 2021

The Protein Data Bank

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https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900990-2

10.1016/S0022-2836(03)00990-2

7 January 2021

Identifiers

DOI

1 reference

28 June 2017

1 reference

PubMed ID

12972255