(Q30986329)

English

Mobile genetic element proliferation and gene inactivation impact over the genome structure and metabolic capabilities of Sodalis glossinidius, the secondary endosymbiont of tsetse flies

scientific article

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scholarly article

1 reference

Europe PubMed Central

PMC publication ID

16 October 2017

Mobile genetic element proliferation and gene inactivation impact over the genome structure and metabolic capabilities of Sodalis glossinidius, the secondary endosymbiont of tsetse flies (English)

1 reference

Europe PubMed Central

PMC publication ID

16 October 2017

0 references

Sodalis glossinidius

object named as

Sodalis glossinidius

1 reference

based on heuristic

inferred from title

2

1 reference

Europe PubMed Central

PubMed publication ID

28 June 2017

object named as

Eugeni Belda

1

0 references

Francisco J Silva

object named as

Francisco J Silva

4

0 references

Stephen D Bentley

3

object named as

Stephen Bentley

1 reference

Europe PubMed Central

PMC publication ID

16 October 2017

language of work or name

0 references

publication date

22 July 2010

1 reference

Europe PubMed Central

PMC publication ID

16 October 2017

1 reference

Europe PubMed Central

PMC publication ID

16 October 2017

11

1 reference

Europe PubMed Central

PMC publication ID

16 October 2017

449

1 reference

Europe PubMed Central

PMC publication ID

16 October 2017

describes a project that uses

object named as

MUMMER

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

https://scigraph.springernature.com/pub.10.1186/1471-2164-11-449

0 references

The Pfam protein families database

1 reference

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21 June 2018

The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases

1 reference

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21 June 2018

The structural and biochemical foundations of thiamin biosynthesis

1 reference

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21 June 2018

EcoCyc: a comprehensive view of Escherichia coli biology

1 reference

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21 June 2018

1 reference

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21 June 2018

HAMAP: a database of completely sequenced microbial proteome sets and manually curated microbial protein families in UniProtKB/Swiss-Prot

1 reference

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21 June 2018

Artemis and ACT: viewing, annotating and comparing sequences stored in a relational database

1 reference

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21 June 2018

The Universal Protein Resource (UniProt) 2009

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Diverse phage-encoded toxins in a protective insect endosymbiont

1 reference

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Massive presence of insertion sequences in the genome of SOPE, the primary endosymbiont of the rice weevil Sitophilus oryzae.

1 reference

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Analysis of milk gland structure and function in Glossina morsitans: milk protein production, symbiont populations and fecundity

1 reference

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1 reference

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21 June 2018

High-throughput functional annotation and data mining with the Blast2GO suite

1 reference

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21 June 2018

Learning how to live together: genomic insights into prokaryote-animal symbioses

1 reference

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Parallel genomic evolution and metabolic interdependence in an ancient symbiosis

1 reference

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21 June 2018

Extensive proliferation of transposable elements in heritable bacterial symbionts

1 reference

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1 reference

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21 June 2018

Clustal W and Clustal X version 2.0

1 reference

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Reconstructing the ancestor of Mycobacterium leprae: the dynamics of gene loss and genome reduction.

1 reference

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KAAS: an automatic genome annotation and pathway reconstruction server

1 reference

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MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) Software Version 4.0

1 reference

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1 reference

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A possible heterodimeric prophage-like element in the genome of the insect endosymbiont Sodalis glossinidius

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091646

21 June 2018

A small microbial genome: the end of a long symbiotic relationship?

1 reference

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21 June 2018

The 160-Kilobase Genome of the Bacterial Endosymbiont Carsonella

1 reference

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21 June 2018

Insertion sequences in prokaryotic genomes

1 reference

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21 June 2018

Molecular interactions between bacterial symbionts and their hosts

1 reference

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1 reference

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The tripartite associations between bacteriophage, Wolbachia, and arthropods.

1 reference

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Acetylornithine transcarbamylase: a novel enzyme in arginine biosynthesis

1 reference

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Escherichia coli K-12: a cooperatively developed annotation snapshot--2005

1 reference

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ISfinder: the reference centre for bacterial insertion sequences

1 reference

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21 June 2018

Massive genome erosion and functional adaptations provide insights into the symbiotic lifestyle of Sodalis glossinidius in the tsetse host

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091646

21 June 2018

The players in a mutualistic symbiosis: insects, bacteria, viruses, and virulence genes

1 reference

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Biology bacteriocyte-associated endosymbionts of plant sap-sucking insects

1 reference

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21 June 2018

Mobile DNA in obligate intracellular bacteria

1 reference

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Genome sequence of Blochmannia pennsylvanicus indicates parallel evolutionary trends among bacterial mutualists of insects

1 reference

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21 June 2018

Extrachromosomal DNA of the symbiont Sodalis glossinidius

1 reference

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21 June 2018

Recognizing the pseudogenes in bacterial genomes

1 reference

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21 June 2018

Interactions among multiple genomes: tsetse, its symbionts and trypanosomes

1 reference

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Genome rearrangement distances and gene order phylogeny in gamma-Proteobacteria

1 reference

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Genomic changes following host restriction in bacteria

1 reference

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21 June 2018

Psi-Phi: exploring the outer limits of bacterial pseudogenes.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091646

21 June 2018

Modification of arthropod vector competence via symbiotic bacteria.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091646

21 June 2018

Comprehensive analysis of pseudogenes in prokaryotes: widespread gene decay and failure of putative horizontally transferred genes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091646

21 June 2018

Bacteriophage flux in endosymbionts (Wolbachia): infection frequency, lateral transfer, and recombination rates

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091646

21 June 2018

Strategies of the home-team: symbioses exploited for vector-borne disease control

1 reference

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21 June 2018

GeneWise and Genomewise

1 reference

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21 June 2018

A signal-arrest-release sequence mediates export and control of the phage P1 endolysin

1 reference

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21 June 2018

Versatile and open software for comparing large genomes

1 reference

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Secreted protein prediction system combining CJ-SPHMM, TMHMM, and PSORT.

1 reference

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21 June 2018

The KEGG resource for deciphering the genome

1 reference

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21 June 2018

Prophages and bacterial genomics: what have we learned so far?

1 reference

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21 June 2018

The genome sequence of Blochmannia floridanus: comparative analysis of reduced genomes

1 reference

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21 June 2018

PSORT-B: Improving protein subcellular localization prediction for Gram-negative bacteria

1 reference

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21 June 2018

Prophage genomics

1 reference

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21 June 2018

Thiamine biosynthesis in Escherichia coli: isolation and initial characterisation of the ThiGH complex.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091646

21 June 2018

Facultative bacterial symbionts in aphids confer resistance to parasitic wasps

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091646

21 June 2018

Reductive genome evolution in Buchnera aphidicola

1 reference

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21 June 2018

Genome sequence of Shigella flexneri 2a: insights into pathogenicity through comparison with genomes of Escherichia coli K12 and O157

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091646

21 June 2018

Genome sequence of the endocellular obligate symbiont of tsetse flies, Wigglesworthia glossinidia

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091646

21 June 2018

Type III secretion systems and the evolution of mutualistic endosymbiosis

1 reference

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21 June 2018

50 Million Years of Genomic Stasis in Endosymbiotic Bacteria

1 reference

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21 June 2018

The process of genome shrinkage in the obligate symbiont Buchnera aphidicola

1 reference

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21 June 2018

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1 reference

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21 June 2018

Deletional bias and the evolution of bacterial genomes

1 reference

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21 June 2018

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1 reference

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21 June 2018

The endosymbionts of tsetse flies: manipulating host-parasite interactions

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21 June 2018

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21 June 2018

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1 reference

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21 June 2018

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21 June 2018

IS elements as constituents of bacterial genomes

1 reference

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21 June 2018

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1 reference

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21 June 2018

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21 June 2018

Thiamin biosynthesis in prokaryotes

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

In vitro cultivation of rickettsia-like-organisms from Glossina spp.

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21 June 2018

Biosynthesis and metabolism of arginine in bacteria

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25 November 2018

For absent friends: life without recombination in mutualistic gamma-proteobacteria

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25 November 2018

The dynamics and time scale of ongoing genomic erosion in symbiotic bacteria

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Sensitive genome-wide screen for low secondary enzymatic activities: the YjbQ family shows thiamin phosphate synthase activity

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25 November 2018

Dynamics of multiple symbiont density regulation during host development: tsetse fly and its microbial flora.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091646

25 November 2018

Gene expression levels influence amino acid usage and evolutionary rates in endosymbiotic bacteria

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091646

25 November 2018

Burkholderia cenocepacia phage BcepMu and a family of Mu-like phages encoding potential pathogenesis factors

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091646

25 November 2018

Gene expression level influences amino acid usage, but not codon usage, in the tsetse fly endosymbiont Wigglesworthia.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091646

25 November 2018

Why are the genomes of endosymbiotic bacteria so stable?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091646

25 November 2018

Comparative molecular evolution of primary (Buchnera) and secondary symbionts of aphids based on two protein-coding genes.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091646

25 November 2018

Bacteriophage Mu genome sequence: analysis and comparison with Mu-like prophages in Haemophilus, Neisseria and Deinococcus.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091646

25 November 2018

Genome size reduction through multiple events of gene disintegration in Buchnera APS.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091646

25 November 2018

Intraspecific phylogenetic congruence among multiple symbiont genomes.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091646

25 November 2018

Tissue distribution and prevalence of Wolbachia infections in tsetse flies, Glossina spp.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091646

25 November 2018

The Dual Biosynthetic Capability ofN-Acetylornithine Aminotransferase in Arginine and Lysine Biosynthesis†

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091646

25 November 2018

Tissue tropism, transmission and expression of foreign genes in vivo in midgut symbionts of tsetse flies

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091646

25 November 2018

Concordant evolution of a symbiont with its host insect species: molecular phylogeny of genus Glossina and its bacteriome-associated endosymbiont, Wigglesworthia glossinidia

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091646

25 November 2018

Reductive evolution of resident genomes.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091646

25 November 2018

Phylogeny and potential transmission routes of midgut-associated endosymbionts of tsetse (Diptera:Glossinidae).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091646

25 November 2018

Mycetome endosymbionts of tsetse flies constitute a distinct lineage related to Enterobacteriaceae

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091646

25 November 2018

MultiFun, a multifunctional classification scheme for Escherichia coli K-12 gene products

1 reference

https://pubmed.ncbi.nlm.nih.gov/20649993

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Where are the pseudogenes in bacterial genomes?

1 reference

https://pubmed.ncbi.nlm.nih.gov/20649993

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1186/1471-2164-11-449

1 reference

Europe PubMed Central

PMC publication ID

16 October 2017

Dimensions Publication ID

1 reference

9 September 2019

https://scigraph.springernature.com/pub.10.1186/1471-2164-11-449

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

16 October 2017

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

16 October 2017

ResearchGate publication ID

0 references

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