(Q31030952)

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Kinetics and thermodynamics of type VIII beta-turn formation: a CD, NMR, and microsecond explicit molecular dynamics study of the GDNP tetrapeptide

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scholarly article

1 reference

Europe PubMed Central

PMC publication ID

15 October 2017

Kinetics and thermodynamics of type VIII beta-turn formation: a CD, NMR, and microsecond explicit molecular dynamics study of the GDNP tetrapeptide (English)

1 reference

Europe PubMed Central

PMC publication ID

15 October 2017

molecular dynamics simulation

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Alexandre Bonvin

2

object named as

Alexandre M J J Bonvin

1 reference

Europe PubMed Central

PMC publication ID

15 October 2017

Brigida Bochicchio

object named as

Brigida Bochicchio

3

0 references

Antonietta Pepe

object named as

Antonietta Pepe

4

0 references

author name string

Patrick F J Fuchs

1

1 reference

Europe PubMed Central

PMC publication ID

15 October 2017

Alain J P Alix

5

1 reference

Europe PubMed Central

PMC publication ID

15 October 2017

Antonio M Tamburro

6

1 reference

Europe PubMed Central

PMC publication ID

15 October 2017

language of work or name

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publication date

27 January 2006

1 reference

Europe PubMed Central

PMC publication ID

15 October 2017

number of pages

15

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based on heuristic

inferred from page(s)

Biophysical Journal

1 reference

Europe PubMed Central

PMC publication ID

15 October 2017

90

1 reference

Europe PubMed Central

PMC publication ID

15 October 2017

8

1 reference

Europe PubMed Central

PMC publication ID

15 October 2017

2745-2759

1 reference

Europe PubMed Central

PMC publication ID

15 October 2017

All-atom empirical potential for molecular modeling and dynamics studies of proteins

1 reference

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21 June 2018

COMPUTING: Screen Savers of the World Unite!

1 reference

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Data-driven docking for the study of biomolecular complexes

1 reference

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21 June 2018

Intrinsic folding of small peptide chains: spectroscopic evidence for the formation of beta-turns in the gas phase

1 reference

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Design of beta-sheet systems for understanding the thermodynamics and kinetics of protein folding

1 reference

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21 June 2018

Structural characterization of VGVAPG, an elastin-derived peptide

1 reference

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21 June 2018

Exploring the range of protein flexibility, from a structural proteomics perspective

1 reference

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Dissection of human tropoelastin: exon-by-exon chemical synthesis and related conformational studies.

1 reference

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Vicinal disulfide turns

1 reference

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Implications of protein flexibility for drug discovery

1 reference

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21 June 2018

Design of beta-turn based therapeutic agents

1 reference

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21 June 2018

Peptide folding simulations

1 reference

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21 June 2018

RefDB: a database of uniformly referenced protein chemical shifts

1 reference

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21 June 2018

Unfolded state of peptides

1 reference

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21 June 2018

Polyproline II structure in proteins: identification by chiroptical spectroscopies, stability, and functions

1 reference

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21 June 2018

Molecular dynamics simulations of biomolecules

1 reference

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21 June 2018

Specialized biology from tandem beta-turns.

1 reference

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21 June 2018

Principles of docking: An overview of search algorithms and a guide to scoring functions

1 reference

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The structural basis of compstatin activity examined by structure-function-based design of peptide analogs and NMR.

1 reference

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21 June 2018

Probing the structural determinants of type II' beta-turn formation in peptides and proteins

1 reference

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21 June 2018

Conformational analysis of the eight-membered ring of the oxidized cysteinyl-cysteine unit implicated in nicotinic acetylcholine receptor ligand recognition

1 reference

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21 June 2018

Design of folded peptides

1 reference

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21 June 2018

Helix nucleation kinetics from molecular simulations in explicit solvent

1 reference

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21 June 2018

Long timescale simulations

1 reference

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21 June 2018

Conformation of the RNA polymerase II C-terminal domain: circular dichroism of long and short fragments.

1 reference

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21 June 2018

beta-hairpin stability and folding: molecular dynamics studies of the first beta-hairpin of tendamistat

1 reference

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21 June 2018

The turn sequence directs beta-strand alignment in designed beta-hairpins

1 reference

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21 June 2018

Early events in the folding of an amphipathic peptide: A multinanosecond molecular dynamics study

1 reference

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21 June 2018

Understanding beta-hairpin formation

1 reference

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21 June 2018

Molecular dynamics simulations of unfolding and refolding of a beta-hairpin fragment of protein G

1 reference

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21 June 2018

Elastin: molecular description and function

1 reference

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21 June 2018

Pathways to a protein folding intermediate observed in a 1-microsecond simulation in aqueous solution

1 reference

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21 June 2018

Formation and stability of β-hairpin structures in polypeptides

1 reference

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21 June 2018

Contrasting roles for symmetrically disposed beta-turns in the folding of a small protein.

1 reference

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21 June 2018

Role of beta-turn residues in beta-hairpin formation and stability in designed peptides

1 reference

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21 June 2018

Folding dynamics and mechanism of β-hairpin formation

1 reference

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21 June 2018

Kinetics of peptide folding: computer simulations of SYPFDV and peptide variants in water.

1 reference

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21 June 2018

Thermodynamics of a reverse turn motif. Solvent effects and side-chain packing

1 reference

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1 reference

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Free energies for refolding of the common beta turn into the inverse-common beta turn: simulation of the role of D/L chirality

1 reference

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A revised set of potentials for beta-turn formation in proteins

1 reference

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21 June 2018

Circular dichroism

1 reference

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1 reference

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1 reference

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21 June 2018

Chain reversals in proteins

1 reference

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Analysis and prediction of the different types of beta-turn in proteins

1 reference

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21 June 2018

Turns in peptides and proteins

1 reference

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21 June 2018

Molecular dynamics simulations in biology

1 reference

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Influence of proline residues on protein conformation

1 reference

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1 reference

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Orthogonal beta beta motifs in proteins

1 reference

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High accuracy prediction of beta-turns and their types using propensities and multiple alignments

1 reference

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Structural characterization of human elastin derived peptides containing the GXXP sequence.

1 reference

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Water network dynamics at the critical moment of a peptide's beta-turn formation: a molecular dynamics study

1 reference

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Complex folding pathways in a simple beta-hairpin

1 reference

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25 November 2018

Molecular dynamics simulations of beta-turn forming tetra- and hexapeptides

1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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Identification of a key structural element for protein folding within beta-hairpin turns

1 reference

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Conformational dependence of collagenase (matrix metalloproteinase-1) up-regulation by elastin peptides in cultured fibroblasts.

1 reference

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25 November 2018

Free energy landscapes of peptides by enhanced conformational sampling

1 reference

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Reversible peptide folding in solution by molecular dynamics simulation

1 reference

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25 November 2018

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1 reference

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1 reference

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25 November 2018

The Key to Solving the Protein-Folding Problem Lies in an Accurate Description of the Denatured State Financial support from the Schweizerischer Nationalfonds (Project no. 21-50929.97) is gratefully acknowledged

1 reference

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Identification of beta-turn and random coil amide III infrared bands for secondary structure estimation of proteins

1 reference

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Nanosecond time scale folding dynamics of a pentapeptide in water

1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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12 December 2020

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1 reference

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12 December 2020

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1 reference

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1 reference

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12 December 2020

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1 reference

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1 reference

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12 December 2020

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1 reference

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1 reference

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1 reference

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12 December 2020

based on heuristic

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1 reference

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12 December 2020

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1 reference

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12 December 2020

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1 reference

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based on heuristic

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Principles of docking: An overview of search algorithms and a guide to scoring functions

1 reference

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1529/BIOPHYSJ.105.074401

1 reference

Europe PubMed Central

PMC publication ID

15 October 2017

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

15 October 2017

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

15 October 2017

ResearchGate publication ID

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