(Q33845595)

29 July 2017

Molecular dynamics simulations of unfolding and refolding of a beta-hairpin fragment of protein G (English)

1 reference

29 July 2017

1 reference

2

1 reference

29 July 2017

Pande VS

1

1 reference

PubMed ID

10430895

29 July 2017

language of work or name

English

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publication date

1 August 1999

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Proceedings of the National Academy of Sciences of the United States of America

29 July 2017

1 reference

29 July 2017

96

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29 July 2017

9062-9067

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29 July 2017

16

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Folding pathway of a lattice model for proteins

29 July 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=17732

Solution conformations and thermodynamics of structured peptides: molecular dynamics simulation with an implicit solvation model.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=17732

Synergy between simulation and experiment in describing the energy landscape of protein folding

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=17732

A statistical mechanical model for beta-hairpin kinetics.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=17732

Formation and stability of beta-hairpin structures in polypeptides

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=17732

Pathways for protein folding: is a new view needed?

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=17732

"New view" of protein folding reconciled with the old through multiple unfolding simulations.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=17732

Folding dynamics and mechanism of beta-hairpin formation

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=17732

Refolding simulations of an isolated fragment of barnase into a native-like beta hairpin: evidence for compactness and hydrogen bonding as concurrent stabilizing factors

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=17732

Molecular dynamics simulations of the unfolding of barnase in water and 8 M aqueous urea

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=17732

A desolvation barrier to hydrophobic cluster formation may contribute to the rate-limiting step in protein folding

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=17732

Direct evidence for modified solvent structure within the hydration shell of a hydrophobic amino acid

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=17732

Characterization of the transition state of protein unfolding by use of molecular dynamics: chymotrypsin inhibitor 2

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=17732

Molecular dynamics simulations of protein unfolding and limited refolding: characterization of partially unfolded states of ubiquitin in 60% methanol and in water

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=17732

Protein unfolding pathways explored through molecular dynamics simulations

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=17732

A short linear peptide that folds into a native stable beta-hairpin in aqueous solution

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=17732

Intermediates in the folding reactions of small proteins

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=17732

Dynamics of activated processes in globular proteins

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=17732

Simulations of protein folding and unfolding

5 July 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.96.16.9062

CHARMM: A program for macromolecular energy, minimization, and dynamics calculations

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.96.16.9062

Comparison of simple potential functions for simulating liquid water

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.96.16.9062

On the transition coordinate for protein folding

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.96.16.9062

Investigation of protein unfolding and stability by computer simulation

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.96.16.9062

Calculations on folding of segment B1 of streptococcal protein G

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.96.16.9062

Can protein unfolding simulate protein folding?

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.96.16.9062

Statistical mechanics of isomerization dynamics in liquids and the transition state approximation

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.96.16.9062

First-principles calculation of the folding free energy of a three-helix bundle protein

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.96.16.9062

21 January 2018

Identifiers

DOI

10.1073/PNAS.96.16.9062

1 reference

29 July 2017

0 references

1 reference

29 July 2017

1 reference

PubMed ID

10430895