(Q36199011)

12 August 2017

Synergy between simulation and experiment in describing the energy landscape of protein folding (English)

1 reference

12 August 2017

0 references

1 reference

A G Ladurner

1

1 reference

12 August 2017

L S Itzhaki

series ordinal

2

1 reference

12 August 2017

V Daggett

series ordinal

3

1 reference

12 August 2017

A R Fersht

series ordinal

4

1 reference

12 August 2017

language of work or name

English

0 references

publication date

1 July 1998

1 reference

Proceedings of the National Academy of Sciences of the United States of America

12 August 2017

1 reference

12 August 2017

95

1 reference

12 August 2017

15

1 reference

12 August 2017

8473-8478

1 reference

Raster3D Version 2.0. A program for photorealistic molecular graphics

12 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=21100

Characterization of residual structure in the thermally denatured state of barnase by simulation and experiment: description of the folding pathway

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=21100

Molecular dynamics simulations of the unfolding of barnase in water and 8 M aqueous urea

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=21100

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=21100

Structural correlations in protein folding funnels

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=21100

Surface point mutations that significantly alter the structure and stability of a protein's denatured state

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=21100

Different folding transition states may result in the same native structure

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=21100

Structural analysis of non-native states of proteins by NMR methods

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=21100

PHD--an automatic mail server for protein secondary structure prediction

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=21100

Molecular dynamics simulation of protein denaturation: solvation of the hydrophobic cores and secondary structure of barnase

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=21100

Characterization of the transition state of protein unfolding by use of molecular dynamics: chymotrypsin inhibitor 2

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=21100

Single versus parallel pathways of protein folding and fractional formation of structure in the transition state

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=21100

Structure of the transition state for the folding/unfolding of the barley chymotrypsin inhibitor 2 and its implications for mechanisms of protein folding.

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=21100

Theoretical studies of protein folding and unfolding

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=21100

Incorporation of glutamine repeats makes protein oligomerize: implications for neurodegenerative diseases

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=21100

Stopped-flow NMR spectroscopy: real-time unfolding studies of 6-19F-tryptophan-labeled Escherichia coli dihydrofolate reductase

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=21100

Search for nucleation sites in smaller fragments of chymotrypsin inhibitor 2.

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=21100

Structural characterization of folding intermediates in cytochrome c by H-exchange labelling and proton NMR.

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=21100

Capping and alpha-helix stability

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=21100

Mapping the transition state and pathway of protein folding by protein engineering

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=21100

Folding of chymotrypsin inhibitor 2. 1. Evidence for a two-state transition

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=21100

"New view" of protein folding reconciled with the old through multiple unfolding simulations.

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=21100

Identification and characterization of the unfolding transition state of chymotrypsin inhibitor 2 by molecular dynamics simulations.

2 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=21100

Elucidating the folding problem of helical peptides using empirical parameters. II. Helix macrodipole effects and rational modification of the helical content of natural peptides.

2 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=21100

6 Protein engineering in analysis of protein folding pathways and stability

2 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=21100

Structure of the transition state for folding of a protein derived from experiment and simulation.

2 July 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.95.15.8473

Specific nucleus as the transition state for protein folding: evidence from the lattice model.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.95.15.8473

Elucidating the folding problem of helical peptides using empirical parameters.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.95.15.8473

Modes and origins of mechanical and ethological isolation in angiosperms.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.95.15.8473

Effect of alanine versus glycine in alpha-helices on protein stability

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.95.15.8473

Analysis of the effect of local interactions on protein stability.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.95.15.8473

MOLSCRIPT: a program to produce both detailed and schematic plots of protein structures

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.95.15.8473

Simulations of the structural and dynamical properties of denatured proteins: the "molten coil" state of bovine pancreatic trypsin inhibitor.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=21100

The Structure of the Transition State for Folding of Chymotrypsin Inhibitor 2 Analysed by Protein Engineering Methods: Evidence for a Nucleation-condensation Mechanism for Protein Folding

22 September 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.95.15.8473

Movement of the position of the transition state in protein folding

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.95.15.8473

Water storage in the mantle

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.95.15.8473

NMR evidence for an early framework intermediate on the folding pathway of ribonuclease A

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.95.15.8473

Conserved residues and the mechanism of protein folding

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.95.15.8473

The development of tertiary interactions during the folding of a large protein

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.95.15.8473

The energy landscape of a fast-folding protein mapped by Ala-->Gly substitutions

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.95.15.8473

Following protein folding in real time using NMR spectroscopy

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.95.15.8473

Acid and thermal denaturation of barnase investigated by molecular dynamics simulations

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.95.15.8473

Quantitative determination of helical propensities from trifluoroethanol titration curves

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.95.15.8473

Alpha-helix stability in proteins. I. Empirical correlations concerning substitution of side-chains at the N and C-caps and the replacement of alanine by glycine or serine at solvent-exposed surfaces

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.95.15.8473

Following co-operative formation of secondary and tertiary structure in a single protein module

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.95.15.8473

Structure of the transition state for folding of the 129 aa protein CheY resembles that of a smaller protein, CI-2

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/9671702

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Nicotinamide adenine dinucleotide-specific glyceraldehyde 3-phosphate dehydrogenase from Pisum sativum. Assay and steady state kinetics

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/9671702

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1073/PNAS.95.15.8473

1 reference

12 August 2017

0 references

1 reference

12 August 2017

1 reference