(Q31067810)

16 August 2017

Genome-wide assessment of differential translations with ribosome profiling data (English)

1 reference

16 August 2017

Xuerui Yang

4

0 references

author name string

Zhengtao Xiao

series ordinal

1

1 reference

16 August 2017

Qin Zou

series ordinal

2

1 reference

16 August 2017

Yu Liu

series ordinal

3

1 reference

16 August 2017

language of work or name

English

0 references

publication date

4 April 2016

1 reference

16 August 2017

Nature Communications

1 reference

16 August 2017

7

1 reference

16 August 2017

11194

1 reference

Creative Commons Attribution 4.0 International

16 August 2017

start time

4 April 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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Assessment of mTOR-Dependent Translational Regulation of Interferon Stimulated Genes

14 July 2018

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Interferon-γ regulates cellular metabolism and mRNA translation to potentiate macrophage activation

14 July 2018

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The RNA-binding protein HuR is essential for the B cell antibody response.

14 July 2018

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Integrative analysis of 111 reference human epigenomes

14 July 2018

1 reference

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Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

14 July 2018

1 reference

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PROTEOFORMER: deep proteome coverage through ribosome profiling and MS integration

14 July 2018

1 reference

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The ever-evolving role of mTOR in translation.

14 July 2018

1 reference

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HTSeq--a Python framework to work with high-throughput sequencing data

14 July 2018

1 reference

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Ribosome profiling reveals pervasive translation outside of annotated protein-coding genes

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4822032

Ribosome profiling reveals sequence-independent post-initiation pausing as a signature of translation

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4822032

RACK1, a versatile hub in cancer

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4822032

A role for eukaryotic initiation factor 4B overexpression in the pathogenesis of diffuse large B-cell lymphoma.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4822032

Assessing gene-level translational control from ribosome profiling

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4822032

Proteomic profiling of endothelial invasion revealed receptor for activated C kinase 1 (RACK1) complexed with vimentin to regulate focal adhesion kinase (FAK)

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4822032

Ribosome profiling reveals resemblance between long non-coding RNAs and 5' leaders of coding RNAs

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4822032

Shrinkage estimation of dispersion in Negative Binomial models for RNA-seq experiments with small sample size

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4822032

Cotranslational response to proteotoxic stress by elongation pausing of ribosomes

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4822032

Widespread regulation of translation by elongation pausing in heat shock

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4822032

Genome-wide ribosome profiling reveals complex translational regulation in response to oxidative stress

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4822032

A new shrinkage estimator for dispersion improves differential expression detection in RNA-seq data

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4822032

The ribosome profiling strategy for monitoring translation in vivo by deep sequencing of ribosome-protected mRNA fragments

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4822032

Detecting differential usage of exons from RNA-seq data

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4822032

A unifying model for mTORC1-mediated regulation of mRNA translation.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4822032

The JAK-STAT pathway at twenty

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4822032

The anti-Shine-Dalgarno sequence drives translational pausing and codon choice in bacteria

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4822032

Ribosome profiling shows that miR-430 reduces translation before causing mRNA decay in zebrafish

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4822032

The translational landscape of mTOR signalling steers cancer initiation and metastasis

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4822032

Differential expression analysis of multifactor RNA-Seq experiments with respect to biological variation

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4822032

High-resolution view of the yeast meiotic program revealed by ribosome profiling

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4822032

Ribosome profiling of mouse embryonic stem cells reveals the complexity and dynamics of mammalian proteomes

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4822032

Global quantification of mammalian gene expression control

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4822032

Identification of differential translation in genome wide studies

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4822032

Differential expression analysis for sequence count data

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4822032

Mammalian microRNAs predominantly act to decrease target mRNA levels

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4822032

baySeq: empirical Bayesian methods for identifying differential expression in sequence count data

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4822032

Mechanisms of mRNA translation of interferon stimulated genes

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4822032

Cross-regulation of signaling pathways by interferon-gamma: implications for immune responses and autoimmune diseases

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4822032

S-adenosyl homocysteine hydrolase is required for Myc-induced mRNA cap methylation, protein synthesis, and cell proliferation.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4822032

Genome-wide analysis in vivo of translation with nucleotide resolution using ribosome profiling

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4822032

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4822032

Genome-wide polysome profiling reveals an inflammation-responsive posttranscriptional operon in gamma interferon-activated monocytes

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4822032

All translation elongation factors and the e, f, and h subunits of translation initiation factor 3 are encoded by 5'-terminal oligopyrimidine (TOP) mRNAs

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4822032

Role of the Akt pathway in mRNA translation of interferon-stimulated genes

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4822032

Release of eIF6 (p27BBP) from the 60S subunit allows 80S ribosome assembly

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4822032

Microarray data normalization and transformation

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4822032

Importin beta, transportin, RanBP5 and RanBP7 mediate nuclear import of ribosomal proteins in mammalian cells

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4822032

A novel class of RanGTP binding proteins

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4822032

Suppression of C-1300 murine neuroblastoma cell proliferation in tissue culture and tumor growth in vivo by (Z)5'-fluoro-4',5'-didehydro-5'-deoxyadenosine (MDL 28,842), an irreversible inhibitor of S-adenosyl-L-homocysteine hydrolase.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4822032

Rapamycin selectively inhibits translation of mRNAs encoding elongation factors and ribosomal proteins

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4822032

The nucleolus: an organelle formed by the act of building a ribosome.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4822032

The mechanism of action of S-adenosylhomocysteinase

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4822032

anota: Analysis of differential translation in genome-wide studies

14 July 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS11194

Regulatory effects of mammalian target of rapamycin-activated pathways in type I and II interferon signaling.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS11194

The mTOR signaling pathway mediates control of ribosomal protein mRNA translation in rat liver

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS11194

Identification of the versatile scaffold protein RACK1 on the eukaryotic ribosome by cryo-EM.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS11194

RACK1 mRNA translation is regulated via a rapamycin-sensitive pathway and coordinated with ribosomal protein synthesis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS11194

Cutadapt removes adapter sequences from high-throughput sequencing reads

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS11194

Living with p values: resurrecting a Bayesian perspective on frequentist statistics

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS11194

RiboDiff: detecting changes of mRNA translation efficiency from ribosome footprints

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/27041671

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

RiboDiff: Detecting Changes of Translation Efficiency from Ribosome Footprints

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS11194

inferred from DOI database lookup

7 January 2021

based on heuristic

Identifiers

DOI

10.1038/NCOMMS11194

1 reference

Dimensions Publication ID

16 August 2017

0 references

0 references

1 reference

16 August 2017

PubMed publication ID

27041671

1 reference