Home
Random
Nearby
Log in
Settings
Donate
About Wikidata
Disclaimers
Search
(Q31115458)
Watch
English
Comparison of pre-processing methodologies for Illumina 450k methylation array data in familial analyses.
scientific article
In more languages
default for all languages
No label defined
No description defined
edit
Statements
instance of
scholarly article
1 reference
stated in
Europe PubMed Central
PMC publication ID
4947255
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27429663%20AND%20SRC:MED&resulttype=core&format=json
retrieved
19 March 2020
title
Comparison of pre-processing methodologies for Illumina 450k methylation array data in familial analyses
(English)
1 reference
stated in
Europe PubMed Central
PMC publication ID
4947255
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27429663%20AND%20SRC:MED&resulttype=core&format=json
retrieved
19 March 2020
author
Adele F Holloway
series ordinal
4
1 reference
stated in
Europe PubMed Central
PMC publication ID
4947255
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27429663%20AND%20SRC:MED&resulttype=core&format=json
retrieved
19 March 2020
Jac Charlesworth
series ordinal
5
1 reference
stated in
Europe PubMed Central
PMC publication ID
4947255
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27429663%20AND%20SRC:MED&resulttype=core&format=json
retrieved
19 March 2020
Joanne L Dickinson
series ordinal
6
1 reference
stated in
Europe PubMed Central
PMC publication ID
4947255
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27429663%20AND%20SRC:MED&resulttype=core&format=json
retrieved
19 March 2020
author name string
Emma Cazaly
series ordinal
1
1 reference
stated in
Europe PubMed Central
PMC publication ID
4947255
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27429663%20AND%20SRC:MED&resulttype=core&format=json
retrieved
19 March 2020
Russell Thomson
series ordinal
2
1 reference
stated in
Europe PubMed Central
PMC publication ID
4947255
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27429663%20AND%20SRC:MED&resulttype=core&format=json
retrieved
19 March 2020
James R Marthick
series ordinal
3
1 reference
stated in
Europe PubMed Central
PMC publication ID
4947255
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27429663%20AND%20SRC:MED&resulttype=core&format=json
retrieved
19 March 2020
publication date
16 July 2016
1 reference
stated in
Europe PubMed Central
PMC publication ID
4947255
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27429663%20AND%20SRC:MED&resulttype=core&format=json
retrieved
19 March 2020
published in
Clinical Epigenetics
1 reference
stated in
Europe PubMed Central
PMC publication ID
4947255
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27429663%20AND%20SRC:MED&resulttype=core&format=json
retrieved
19 March 2020
volume
8
1 reference
stated in
Europe PubMed Central
PMC publication ID
4947255
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27429663%20AND%20SRC:MED&resulttype=core&format=json
retrieved
19 March 2020
page(s)
75
1 reference
stated in
Europe PubMed Central
PMC publication ID
4947255
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27429663%20AND%20SRC:MED&resulttype=core&format=json
retrieved
19 March 2020
describes a project that uses
minfi
object named as
minfi
1 reference
stated in
CZ Software Mentions: A large dataset of software mentions in the biomedical literature
cites work
Functional normalization of 450k methylation array data improves replication in large cancer studies.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4947255
retrieved
21 June 2018
Analysis pipelines and packages for Infinium HumanMethylation450 BeadChip (450k) data
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4947255
retrieved
21 June 2018
Large hypomethylated blocks as a universal defining epigenetic alteration in human solid tumors
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4947255
retrieved
21 June 2018
Methylation quantitative trait loci (meQTLs) are consistently detected across ancestry, developmental stage, and tissue type
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4947255
retrieved
21 June 2018
Minfi: a flexible and comprehensive Bioconductor package for the analysis of Infinium DNA methylation microarrays
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4947255
retrieved
21 June 2018
ChAMP: 450k Chip Analysis Methylation Pipeline
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4947255
retrieved
21 June 2018
SNPs located at CpG sites modulate genome-epigenome interaction
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4947255
retrieved
21 June 2018
A data-driven approach to preprocessing Illumina 450K methylation array data
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4947255
retrieved
21 June 2018
Epigenetic analysis leads to identification of HNF1B as a subtype-specific susceptibility gene for ovarian cancer
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4947255
retrieved
21 June 2018
Low-level processing of Illumina Infinium DNA Methylation BeadArrays
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4947255
retrieved
21 June 2018
The presence of methylation quantitative trait loci indicates a direct genetic influence on the level of DNA methylation in adipose tissue
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4947255
retrieved
21 June 2018
An evaluation of analysis pipelines for DNA methylation profiling using the Illumina HumanMethylation450 BeadChip platform
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4947255
retrieved
21 June 2018
Discovery of cross-reactive probes and polymorphic CpGs in the Illumina Infinium HumanMethylation450 microarray
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4947255
retrieved
21 June 2018
A beta-mixture quantile normalization method for correcting probe design bias in Illumina Infinium 450 k DNA methylation data
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4947255
retrieved
21 June 2018
Analysing and interpreting DNA methylation data
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4947255
retrieved
21 June 2018
Identification of constitutional MLH1 epimutations and promoter variants in colorectal cancer patients from the Colon Cancer Family Registry
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4947255
retrieved
21 June 2018
SWAN: Subset-quantile within array normalization for illumina infinium HumanMethylation450 BeadChips
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4947255
retrieved
21 June 2018
Complete pipeline for Infinium(®) Human Methylation 450K BeadChip data processing using subset quantile normalization for accurate DNA methylation estimation.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4947255
retrieved
21 June 2018
The sva package for removing batch effects and other unwanted variation in high-throughput experiments
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4947255
retrieved
21 June 2018
Batch effect correction for genome-wide methylation data with Illumina Infinium platform
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4947255
retrieved
21 June 2018
Analysis of DNA methylation in a three-generation family reveals widespread genetic influence on epigenetic regulation.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4947255
retrieved
21 June 2018
DNA methylation patterns associate with genetic and gene expression variation in HapMap cell lines
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4947255
retrieved
21 June 2018
Comparison of Beta-value and M-value methods for quantifying methylation levels by microarray analysis
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4947255
retrieved
21 June 2018
Comprehensive methylome map of lineage commitment from haematopoietic progenitors
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4947255
retrieved
21 June 2018
Abundant quantitative trait loci exist for DNA methylation and gene expression in human brain
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4947255
retrieved
21 June 2018
Allele-specific methylation is prevalent and is contributed by CpG-SNPs in the human genome
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4947255
retrieved
21 June 2018
Genetic control of individual differences in gene-specific methylation in human brain.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4947255
retrieved
21 June 2018
Epigenetics in cancer
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4947255
retrieved
21 June 2018
The human colon cancer methylome shows similar hypo- and hypermethylation at conserved tissue-specific CpG island shores
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4947255
retrieved
21 June 2018
lumi: a pipeline for processing Illumina microarray
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4947255
retrieved
21 June 2018
DNA methylation landscapes: provocative insights from epigenomics
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4947255
retrieved
21 June 2018
Aging and DNA methylation
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/27429663
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Identifiers
DOI
10.1186/S13148-016-0241-2
1 reference
stated in
Europe PubMed Central
PMC publication ID
4947255
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27429663%20AND%20SRC:MED&resulttype=core&format=json
retrieved
19 March 2020
Dimensions Publication ID
1027083735
0 references
PMC publication ID
4947255
1 reference
stated in
Europe PubMed Central
PMC publication ID
4947255
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27429663%20AND%20SRC:MED&resulttype=core&format=json
retrieved
19 March 2020
PubMed publication ID
27429663
1 reference
stated in
Europe PubMed Central
PMC publication ID
4947255
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27429663%20AND%20SRC:MED&resulttype=core&format=json
retrieved
19 March 2020
Sitelinks
Wikipedia
(0 entries)
edit
Wikibooks
(0 entries)
edit
Wikinews
(0 entries)
edit
Wikiquote
(0 entries)
edit
Wikisource
(0 entries)
edit
Wikiversity
(0 entries)
edit
Wikivoyage
(0 entries)
edit
Wiktionary
(0 entries)
edit
Multilingual sites
(0 entries)
edit