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Comparison of pre-processing methodologies for Illumina 450k methylation array data in familial analyses.
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Europe PubMed Central
PMC publication ID
4947255
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27429663%20AND%20SRC:MED&resulttype=core&format=json
retrieved
19 March 2020
title
Comparison of pre-processing methodologies for Illumina 450k methylation array data in familial analyses
(English)
1 reference
stated in
Europe PubMed Central
PMC publication ID
4947255
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27429663%20AND%20SRC:MED&resulttype=core&format=json
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19 March 2020
author
Adele F Holloway
series ordinal
4
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Europe PubMed Central
PMC publication ID
4947255
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27429663%20AND%20SRC:MED&resulttype=core&format=json
retrieved
19 March 2020
Jac Charlesworth
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5
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stated in
Europe PubMed Central
PMC publication ID
4947255
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27429663%20AND%20SRC:MED&resulttype=core&format=json
retrieved
19 March 2020
Joanne L Dickinson
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6
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Europe PubMed Central
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4947255
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27429663%20AND%20SRC:MED&resulttype=core&format=json
retrieved
19 March 2020
author name string
Emma Cazaly
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1
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Europe PubMed Central
PMC publication ID
4947255
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27429663%20AND%20SRC:MED&resulttype=core&format=json
retrieved
19 March 2020
Russell Thomson
series ordinal
2
1 reference
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Europe PubMed Central
PMC publication ID
4947255
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27429663%20AND%20SRC:MED&resulttype=core&format=json
retrieved
19 March 2020
James R Marthick
series ordinal
3
1 reference
stated in
Europe PubMed Central
PMC publication ID
4947255
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27429663%20AND%20SRC:MED&resulttype=core&format=json
retrieved
19 March 2020
publication date
16 July 2016
1 reference
stated in
Europe PubMed Central
PMC publication ID
4947255
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27429663%20AND%20SRC:MED&resulttype=core&format=json
retrieved
19 March 2020
published in
Clinical Epigenetics
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Europe PubMed Central
PMC publication ID
4947255
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27429663%20AND%20SRC:MED&resulttype=core&format=json
retrieved
19 March 2020
volume
8
1 reference
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Europe PubMed Central
PMC publication ID
4947255
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27429663%20AND%20SRC:MED&resulttype=core&format=json
retrieved
19 March 2020
page(s)
75
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Europe PubMed Central
PMC publication ID
4947255
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27429663%20AND%20SRC:MED&resulttype=core&format=json
retrieved
19 March 2020
describes a project that uses
minfi
object named as
minfi
1 reference
stated in
CZ Software Mentions: A large dataset of software mentions in the biomedical literature
cites work
Functional normalization of 450k methylation array data improves replication in large cancer studies.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4947255
retrieved
21 June 2018
Analysis pipelines and packages for Infinium HumanMethylation450 BeadChip (450k) data
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4947255
retrieved
21 June 2018
Large hypomethylated blocks as a universal defining epigenetic alteration in human solid tumors
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4947255
retrieved
21 June 2018
Methylation quantitative trait loci (meQTLs) are consistently detected across ancestry, developmental stage, and tissue type
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4947255
retrieved
21 June 2018
Minfi: a flexible and comprehensive Bioconductor package for the analysis of Infinium DNA methylation microarrays
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4947255
retrieved
21 June 2018
ChAMP: 450k Chip Analysis Methylation Pipeline
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4947255
retrieved
21 June 2018
SNPs located at CpG sites modulate genome-epigenome interaction
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4947255
retrieved
21 June 2018
A data-driven approach to preprocessing Illumina 450K methylation array data
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4947255
retrieved
21 June 2018
Epigenetic analysis leads to identification of HNF1B as a subtype-specific susceptibility gene for ovarian cancer
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4947255
retrieved
21 June 2018
Low-level processing of Illumina Infinium DNA Methylation BeadArrays
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4947255
retrieved
21 June 2018
The presence of methylation quantitative trait loci indicates a direct genetic influence on the level of DNA methylation in adipose tissue
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4947255
retrieved
21 June 2018
An evaluation of analysis pipelines for DNA methylation profiling using the Illumina HumanMethylation450 BeadChip platform
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4947255
retrieved
21 June 2018
Discovery of cross-reactive probes and polymorphic CpGs in the Illumina Infinium HumanMethylation450 microarray
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4947255
retrieved
21 June 2018
A beta-mixture quantile normalization method for correcting probe design bias in Illumina Infinium 450 k DNA methylation data
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4947255
retrieved
21 June 2018
Analysing and interpreting DNA methylation data
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4947255
retrieved
21 June 2018
Identification of constitutional MLH1 epimutations and promoter variants in colorectal cancer patients from the Colon Cancer Family Registry
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4947255
retrieved
21 June 2018
SWAN: Subset-quantile within array normalization for illumina infinium HumanMethylation450 BeadChips
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4947255
retrieved
21 June 2018
Complete pipeline for Infinium(®) Human Methylation 450K BeadChip data processing using subset quantile normalization for accurate DNA methylation estimation.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4947255
retrieved
21 June 2018
The sva package for removing batch effects and other unwanted variation in high-throughput experiments
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4947255
retrieved
21 June 2018
Batch effect correction for genome-wide methylation data with Illumina Infinium platform
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4947255
retrieved
21 June 2018
Analysis of DNA methylation in a three-generation family reveals widespread genetic influence on epigenetic regulation.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4947255
retrieved
21 June 2018
DNA methylation patterns associate with genetic and gene expression variation in HapMap cell lines
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4947255
retrieved
21 June 2018
Comparison of Beta-value and M-value methods for quantifying methylation levels by microarray analysis
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4947255
retrieved
21 June 2018
Comprehensive methylome map of lineage commitment from haematopoietic progenitors
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4947255
retrieved
21 June 2018
Abundant quantitative trait loci exist for DNA methylation and gene expression in human brain
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4947255
retrieved
21 June 2018
Allele-specific methylation is prevalent and is contributed by CpG-SNPs in the human genome
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4947255
retrieved
21 June 2018
Genetic control of individual differences in gene-specific methylation in human brain.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4947255
retrieved
21 June 2018
Epigenetics in cancer
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4947255
retrieved
21 June 2018
The human colon cancer methylome shows similar hypo- and hypermethylation at conserved tissue-specific CpG island shores
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4947255
retrieved
21 June 2018
lumi: a pipeline for processing Illumina microarray
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4947255
retrieved
21 June 2018
DNA methylation landscapes: provocative insights from epigenomics
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4947255
retrieved
21 June 2018
Aging and DNA methylation
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/27429663
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Identifiers
DOI
10.1186/S13148-016-0241-2
1 reference
stated in
Europe PubMed Central
PMC publication ID
4947255
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27429663%20AND%20SRC:MED&resulttype=core&format=json
retrieved
19 March 2020
Dimensions Publication ID
1027083735
0 references
PMC publication ID
4947255
1 reference
stated in
Europe PubMed Central
PMC publication ID
4947255
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27429663%20AND%20SRC:MED&resulttype=core&format=json
retrieved
19 March 2020
PubMed publication ID
27429663
1 reference
stated in
Europe PubMed Central
PMC publication ID
4947255
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27429663%20AND%20SRC:MED&resulttype=core&format=json
retrieved
19 March 2020
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