(Q31120036)

9 October 2017

Consensus Data Mining (CDM) Protein Secondary Structure Prediction Server: combining GOR V and Fragment Database Mining (FDM) (English)

1 reference

protein structure prediction

9 October 2017

0 references

0 references

Taner Z Sen

2

0 references

Robert L Jernigan

series ordinal

3

object named as

Robert L Jernigan

1 reference

9 October 2017

4

Andrzej Kloczkowski

1 reference

9 October 2017

Haitao Cheng

1

1 reference

PMCID

2553684

9 October 2017

language of work or name

English

0 references

publication date

27 July 2007

1 reference

9 October 2017

3

1 reference

based on heuristic

inferred from page(s)

published in

Bioinformatics

1 reference

9 October 2017

23

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9 October 2017

19

1 reference

9 October 2017

2628-2630

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Prediction of protein secondary structure by mining structural fragment database

9 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2553684

Bhageerath: an energy based web enabled computer software suite for limiting the search space of tertiary structures of small globular proteins

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2553684

A Consensus Data Mining secondary structure prediction by combining GOR V and Fragment Database Mining

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2553684

Rigorous performance evaluation in protein structure modelling and implications for computational biology.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2553684

The effect of long-range interactions on the secondary structure formation of proteins

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2553684

GOR V server for protein secondary structure prediction

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2553684

Secondary-structure matching (SSM), a new tool for fast protein structure alignment in three dimensions

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2553684

Coupled prediction of protein secondary and tertiary structure

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2553684

Combining the GOR V algorithm with evolutionary information for protein secondary structure prediction from amino acid sequence

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2553684

EVA: continuous automatic evaluation of protein structure prediction servers.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2553684

Review: protein secondary structure prediction continues to rise.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2553684

28 July 2018

The Protein Data Bank

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2553684

Protein secondary structure prediction based on position-specific scoring matrices

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2553684

Assembly of protein tertiary structures from fragments with similar local sequences using simulated annealing and Bayesian scoring functions

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2553684

PHD: predicting one-dimensional protein structure by profile-based neural networks

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2553684

Basic local alignment search tool

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2553684

Analysis of the accuracy and implications of simple methods for predicting the secondary structure of globular proteins

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2553684

GOR method for predicting protein secondary structure from amino acid sequence.

28 July 2018

1 reference

Crossref

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM379

Distinct structural elements in the first membrane-spanning segment of the epithelial sodium channel.

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM379

Functional analysis of the carboxy-terminal region of Bacillus subtilis TnrA, a MerR family protein

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM379

Further developments of protein secondary structure prediction using information theory. New parameters and consideration of residue pairs

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17660202

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/BIOINFORMATICS/BTM379

1 reference

journals/bioinformatics/ChengSJK07

9 October 2017

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

9 October 2017

1 reference

PMCID

2553684