(Q40899626)

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Bhageerath: an energy based web enabled computer software suite for limiting the search space of tertiary structures of small globular proteins

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scholarly article

1 reference

Europe PubMed Central

24 September 2017

Bhageerath: an energy based web enabled computer software suite for limiting the search space of tertiary structures of small globular proteins (English)

1 reference

Europe PubMed Central

24 September 2017

protein structure

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object named as

Debashish Sahu

7

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author name string

B Jayaram

1

1 reference

Europe PubMed Central

24 September 2017

Kumkum Bhushan

2

1 reference

Europe PubMed Central

24 September 2017

Sandhya R Shenoy

3

1 reference

Europe PubMed Central

24 September 2017

Pooja Narang

4

1 reference

Europe PubMed Central

24 September 2017

Surojit Bose

5

1 reference

Europe PubMed Central

24 September 2017

Praveen Agrawal

6

1 reference

Europe PubMed Central

24 September 2017

Vidhu Pandey

8

1 reference

Europe PubMed Central

24 September 2017

publication date

7 November 2006

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Europe PubMed Central

24 September 2017

Nucleic Acids Research

1 reference

Europe PubMed Central

24 September 2017

34

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Europe PubMed Central

24 September 2017

21

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Europe PubMed Central

24 September 2017

6195-6204

1 reference

Europe PubMed Central

24 September 2017

A computational pathway for bracketing native-like structures fo small alpha helical globular proteins.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1693886

24 September 2017

Protein structure evaluation using an all-atom energy based empirical scoring function.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1693886

24 September 2017

SimFold energy function for de novo protein structure prediction: consensus with Rosetta.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1693886

24 September 2017

Assessment of predictions submitted for the CASP6 comparative modeling category

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1693886

24 September 2017

Toward high-resolution de novo structure prediction for small proteins.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1693886

24 September 2017

PROTINFO: new algorithms for enhanced protein structure predictions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1693886

24 September 2017

SCRATCH: a protein structure and structural feature prediction server

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1693886

24 September 2017

Protein structure prediction servers at University College London

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1693886

24 September 2017

GOR V server for protein secondary structure prediction

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1693886

24 September 2017

Ab initio simulations of protein-folding pathways by molecular dynamics with the united-residue model of polypeptide chains

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1693886

24 September 2017

Protein structure prediction and analysis using the Robetta server.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1693886

24 September 2017

The PredictProtein server

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1693886

24 September 2017

Assessment of homology-based predictions in CASP5.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1693886

24 September 2017

ASTRO-FOLD: A Combinatorial and Global Optimization Framework for Ab Initio Prediction of Three-Dimensional Structures of Proteins from the Amino Acid Sequence

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1693886

24 September 2017

LGA: A method for finding 3D similarities in protein structures

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1693886

24 September 2017

Comparative modeling of CASP4 target proteins: combining results of sequence search with three-dimensional structure assessment.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1693886

24 September 2017

Enhancement of protein modeling by human intervention in applying the automatic programs 3D-JIGSAW and 3D-PSSM.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1693886

24 September 2017

Prospects for ab initio protein structural genomics.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1693886

24 September 2017

Recent improvements in prediction of protein structure by global optimization of a potential energy function.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1693886

24 September 2017

Protein structure prediction.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1693886

24 September 2017

Defrosting the frozen approximation: PROSPECTOR--a new approach to threading.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1693886

24 September 2017

A surprising simplicity to protein folding.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1693886

24 September 2017

Predicting protein three-dimensional structure.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1693886

24 September 2017

The Protein Data Bank

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1693886

24 September 2017

Ab initio fold prediction of small helical proteins using distance geometry and knowledge-based scoring functions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1693886

24 September 2017

JPred: a consensus secondary structure prediction server

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1693886

24 September 2017

https://api.crossref.org/works/10.1093%2FNAR%2FGKL789

21 January 2018

SWISS-MODEL and the Swiss-PdbViewer: an environment for comparative protein modeling

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1693886

24 September 2017

Evaluation of comparative protein structure modeling by MODELLER-3.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1693886

24 September 2017

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1693886

24 September 2017

Bridging the protein sequence-structure gap by structure predictions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1693886

24 September 2017

Comparative protein modelling by satisfaction of spatial restraints

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1693886

24 September 2017

Global fold determination from a small number of distance restraints

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1693886

24 September 2017

Principles that govern the folding of protein chains

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1693886

24 September 2017

Recent developments in the theory of protein folding: searching for the global energy minimum

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1693886

25 September 2017

Fold assembly of small proteins using monte carlo simulations driven by restraints derived from multiple sequence alignments.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1693886

17 June 2018

ESyPred3D: Prediction of proteins 3D structures.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1693886

19 August 2018

Geno3D: automatic comparative molecular modelling of protein.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1693886

19 August 2018

Combination of threading potentials and sequence profiles improves fold recognition.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1693886

19 August 2018

Incorporation of non-local interactions in protein secondary structure prediction from the amino acid sequence.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1693886

19 August 2018

Protein modelling for all

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKL789

21 January 2018

An automatic homology modeling method consisting of database searches and simulated annealing

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKL789

21 January 2018

Identifiers

10.1093/NAR/GKL789

1 reference

Europe PubMed Central

24 September 2017

1 reference

Europe PubMed Central

24 September 2017

1 reference

Europe PubMed Central

24 September 2017

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