(Q30327941)

5 September 2017

Recent improvements in prediction of protein structure by global optimization of a potential energy function. (English)

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protein function prediction

5 September 2017

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protein structure prediction

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S Oldziej

7

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Cezary Czaplewski

object named as

C Czaplewski

2

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Harold A. Scheraga

13

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H A Scheraga

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5 September 2017

J Pillardy

1

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5 September 2017

A Liwo

3

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5 September 2017

J Lee

4

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5 September 2017

D R Ripoll

5

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5 September 2017

R Kaźmierkiewicz

6

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5 September 2017

W J Wedemeyer

8

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5 September 2017

K D Gibson

9

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5 September 2017

Y A Arnautova

10

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5 September 2017

J Saunders

11

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5 September 2017

Y J Ye

12

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5 September 2017

language of work or name

English

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publication date

20 February 2001

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Proceedings of the National Academy of Sciences of the United States of America

5 September 2017

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5 September 2017

98

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5 September 2017

5

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5 September 2017

2329-2333

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Bacteriocin AS-48, a microbial cyclic polypeptide structurally and functionally related to mammalian NK-lysin

5 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=30138

Analysis and assessment of ab initio three-dimensional prediction, secondary structure, and contacts prediction

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=30138

Protein structure prediction by global optimization of a potential energy function.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=30138

Energy-based de novo protein folding by conformational space annealing and an off-lattice united-residue force field: application to the 10-55 fragment of staphylococcal protein A and to apo calbindin D9K.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=30138

Protein structure prediction by threading. Why it works and why it does not.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=30138

New developments of the electrostatically driven Monte Carlo method: test on the membrane-bound portion of melittin

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=30138

Design of a 20-amino acid, three-stranded beta-sheet protein

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=30138

What is the probability of a chance prediction of a protein structure with an rmsd of 6 A?

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=30138

De novo protein design: fully automated sequence selection

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=30138

Progress in protein structure prediction

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=30138

Recent developments in the theory of protein folding: searching for the global energy minimum

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=30138

Assigning amino acid sequences to 3-dimensional protein folds.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=30138

Alignment and searching for common protein folds using a data bank of structural templates

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=30138

Boltzmann's principle, knowledge-based mean fields and protein folding. An approach to the computational determination of protein structures

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=30138

De novo and inverse folding predictions of protein structure and dynamics

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=30138

Calculation of protein backbone geometry from alpha-carbon coordinates based on peptide-group dipole alignment

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=30138

Computation of structures of homologous proteins. .alpha.-Lactalbumin from lysozyme

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=30138

Low-energy structures of two dipeptides and their relationship to bend conformations.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=30138

Principles that govern the folding of protein chains

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=30138

Using known substructures in protein model building and crystallography

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=30138

On the multiple-minima problem in the conformational analysis of polypeptides. II. An electrostatically driven Monte Carlo method--tests on poly(L-alanine).

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=30138

Protein topology prediction through constraint-based search and the evaluation of topological folding rules.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=30138

Three-dimensional solution structure of the B domain of staphylococcal protein A: comparisons of the solution and crystal structures

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=30138

Extracting information on folding from the amino acid sequence: consensus regions with preferred conformation in homologous proteins

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=30138

Computer simulation of protein folding

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=30138

Easily searched protein folding potentials.

3 June 2018

1 reference

Crossref

https://api.crossref.org/works/10.1073%2FPNAS.041609598

21 January 2018

Identifiers

DOI

10.1073/PNAS.041609598

1 reference

5 September 2017

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1 reference

5 September 2017

PubMed publication ID

11226239

1 reference