(Q31135309)

19 October 2017

Analysis of CATMA transcriptome data identifies hundreds of novel functional genes and improves gene models in the Arabidopsis genome (English)

1 reference

19 October 2017

8

Mathieu Ingouff

1 reference

19 October 2017

Sébastien Aubourg

1

1 reference

19 October 2017

Marie-Laure Martin-Magniette

2

1 reference

19 October 2017

Véronique Brunaud

3

1 reference

19 October 2017

Ludivine Taconnat

4

1 reference

19 October 2017

Frédérique Bitton

5

1 reference

19 October 2017

Sandrine Balzergue

6

1 reference

19 October 2017

Pauline E Jullien

7

1 reference

19 October 2017

Vincent Thareau

9

1 reference

19 October 2017

Thomas Schiex

10

1 reference

19 October 2017

Alain Lecharny

11

1 reference

19 October 2017

Jean-Pierre Renou

12

1 reference

19 October 2017

language of work or name

English

0 references

publication date

2 November 2007

1 reference

19 October 2017

1 reference

19 October 2017

8

1 reference

19 October 2017

401

1 reference

https://scigraph.springernature.com/pub.10.1186/1471-2164-8-401

19 October 2017

0 references

cites work

A large number of novel coding small open reading frames in the intergenic regions of the Arabidopsis thaliana genome are transcribed and/or under purifying selection

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2174955

Experimental validation of novel genes predicted in the un-annotated regions of the Arabidopsis genome

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2174955

NCBI GEO: mining tens of millions of expression profiles--database and tools update

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2174955

Pfam: clans, web tools and services

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2174955

Comparing low coverage random shotgun sequence data from Brassica oleracea and Oryza sativa genome sequence for their ability to add to the annotation of Arabidopsis thaliana

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2174955

GeneFarm, structural and functional annotation of Arabidopsis gene and protein families by a network of experts

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2174955

Versatile gene-specific sequence tags for Arabidopsis functional genomics: transcript profiling and reverse genetics applications

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2174955

The use of MPSS for whole-genome transcriptional analysis in Arabidopsis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2174955

Detection of 91 potential conserved plant microRNAs in Arabidopsis thaliana and Oryza sativa identifies important target genes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2174955

FLAGdb++: a database for the functional analysis of the Arabidopsis genome

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2174955

Improving the Arabidopsis genome annotation using maximal transcript alignment assemblies

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2174955

The Arabidopsis Information Resource (TAIR): a model organism database providing a centralized, curated gateway to Arabidopsis biology, research materials and community

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2174955

CATMA: a complete Arabidopsis GST database

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2174955

ArrayExpress--a public repository for microarray gene expression data at the EBI

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2174955

Current methods of gene prediction, their strengths and weaknesses

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2174955

Normalization for cDNA microarray data: a robust composite method addressing single and multiple slide systematic variation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2174955

Integrating genomic homology into gene structure prediction.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2174955

Analysis of the genome sequence of the flowering plant Arabidopsis thaliana

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2174955

Functional discovery via a compendium of expression profiles

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2174955

Primer3 on the WWW for general users and for biologist programmers

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2174955

Characterization of 43 non-protein-coding mRNA genes in Arabidopsis, including the MIR162a-derived transcripts.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2174955

A gene expression map for the euchromatic genome of Drosophila melanogaster.

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2174955

Automatic design of gene-specific sequence tags for genome-wide functional studies.

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2174955

Annotation of the Arabidopsis genome

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2174955

Orphan transcripts in Arabidopsis thaliana: identification of several hundred previously unrecognized genes

25 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17980019

12 December 2020

inferred from PubMed ID database lookup

Identifiers

DOI

10.1186/1471-2164-8-401

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/x4hh3z4y7jhi3akdalhy2bcgbe

30 July 2022

Dimensions Publication ID

1013294267

0 references

Fatcat ID

release_x4hh3z4y7jhi3akdalhy2bcgbe

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/x4hh3z4y7jhi3akdalhy2bcgbe

30 July 2022

https://api.fatcat.wiki/v0/release/x4hh3z4y7jhi3akdalhy2bcgbe

1 reference

30 July 2022

https://api.fatcat.wiki/v0/release/x4hh3z4y7jhi3akdalhy2bcgbe

PubMed publication ID

1 reference

30 July 2022