(Q24797180)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15608279%20AND%20SRC:MED&resulttype=core&format=json

6 January 2020

title

GeneFarm, structural and functional annotation of Arabidopsis gene and protein families by a network of experts (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15608279%20AND%20SRC:MED&resulttype=core&format=json

6 January 2020

7

1 reference

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6 January 2020

J. Mark Cock

4

1 reference

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6 January 2020

Richard Cooke

5

1 reference

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6 January 2020

Cyril Pommier

29

1 reference

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6 January 2020

Stephane Rombauts

33

1 reference

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6 January 2020

Michel Schneider

35

1 reference

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6 January 2020

Ian Small

37

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15608279%20AND%20SRC:MED&resulttype=core&format=json

6 January 2020

Michael Tognolli

41

1 reference

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6 January 2020

19

Elisabeth Jamet

1 reference

6 January 2020

Sébastien Aubourg

1

1 reference

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6 January 2020

Véronique Brunaud

2

1 reference

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6 January 2020

Clémence Bruyère

3

1 reference

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6 January 2020

Annick Cottet

6

1 reference

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6 January 2020

Patrice Déhais

8

1 reference

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6 January 2020

Gilbert Deléage

9

1 reference

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6 January 2020

Aymeric Duclert

10

1 reference

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6 January 2020

Manuel Echeverria

11

1 reference

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6 January 2020

Aimée Eschbach

12

1 reference

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6 January 2020

Denis Falconet

13

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15608279%20AND%20SRC:MED&resulttype=core&format=json

6 January 2020

Ghislain Filippi

14

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15608279%20AND%20SRC:MED&resulttype=core&format=json

6 January 2020

Christine Gaspin

15

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15608279%20AND%20SRC:MED&resulttype=core&format=json

6 January 2020

Christophe Geourjon

16

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15608279%20AND%20SRC:MED&resulttype=core&format=json

6 January 2020

Jean-Michel Grienenberger

17

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15608279%20AND%20SRC:MED&resulttype=core&format=json

6 January 2020

Guy Houlné

18

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15608279%20AND%20SRC:MED&resulttype=core&format=json

6 January 2020

Frédéric Lechauve

20

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15608279%20AND%20SRC:MED&resulttype=core&format=json

6 January 2020

Olivier Leleu

21

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15608279%20AND%20SRC:MED&resulttype=core&format=json

6 January 2020

Philippe Leroy

22

1 reference

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6 January 2020

Régis Mache

23

1 reference

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6 January 2020

Christian Meyer

24

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15608279%20AND%20SRC:MED&resulttype=core&format=json

6 January 2020

Hafed Nedjari

25

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15608279%20AND%20SRC:MED&resulttype=core&format=json

6 January 2020

Ioan Negrutiu

26

1 reference

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6 January 2020

Valérie Orsini

27

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15608279%20AND%20SRC:MED&resulttype=core&format=json

6 January 2020

Eric Peyretaillade

28

1 reference

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6 January 2020

Jeroen Raes

30

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15608279%20AND%20SRC:MED&resulttype=core&format=json

6 January 2020

Jean-Loup Risler

31

1 reference

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6 January 2020

Stéphane Rivière

32

1 reference

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6 January 2020

Pierre Rouzé

34

1 reference

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6 January 2020

Philippe Schwob

36

1 reference

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6 January 2020

Ghislain Soumayet-Kampetenga

38

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15608279%20AND%20SRC:MED&resulttype=core&format=json

6 January 2020

Darko Stankovski

39

1 reference

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6 January 2020

Claire Toffano

40

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15608279%20AND%20SRC:MED&resulttype=core&format=json

6 January 2020

Michel Caboche

42

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15608279%20AND%20SRC:MED&resulttype=core&format=json

6 January 2020

Alain Lecharny

43

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15608279%20AND%20SRC:MED&resulttype=core&format=json

6 January 2020

language of work or name

English

0 references

publication date

1 January 2005

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15608279%20AND%20SRC:MED&resulttype=core&format=json

6 January 2020

published in

Nucleic Acids Research

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15608279%20AND%20SRC:MED&resulttype=core&format=json

6 January 2020

volume

33

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15608279%20AND%20SRC:MED&resulttype=core&format=json

6 January 2020

issue

Database issue

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15608279%20AND%20SRC:MED&resulttype=core&format=json

6 January 2020

page(s)

D641-6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15608279%20AND%20SRC:MED&resulttype=core&format=json

Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins reveals their essential role in organelle biogenesis

6 January 2020

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=540069

The Pfam protein families database

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=540069

UniProt: the Universal Protein knowledgebase

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=540069

GeneMark.hmm: new solutions for gene finding

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=540069

Analysis of the genome sequence of the flowering plant Arabidopsis thaliana

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=540069

The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=540069

Prediction of protein secondary structure at better than 70% accuracy

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=540069

The Gene Ontology Annotation (GOA) Database: sharing knowledge in Uniprot with Gene Ontology

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=540069

Improving the Arabidopsis genome annotation using maximal transcript alignment assemblies

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=540069

Whole genome sequence comparisons and "full-length" cDNA sequences: a combined approach to evaluate and improve Arabidopsis genome annotation

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=540069

Carpe diem. Retooling the publish or perish model into the share and survive model

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=540069

PlantGDB, plant genome database and analysis tools

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=540069

PHYTOPROT: a database of clusters of plant proteins

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=540069

FLAGdb++: a database for the functional analysis of the Arabidopsis genome

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=540069

European consortia building integrated resources for Arabidopsis functional genomics.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=540069

EUGENE'HOM: A generic similarity-based gene finder using multiple homologous sequences

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=540069

Computational discovery of internal micro-exons

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=540069

The Arabidopsis Information Resource (TAIR): a model organism database providing a centralized, curated gateway to Arabidopsis biology, research materials and community

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=540069

Current methods of gene prediction, their strengths and weaknesses

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=540069

Identification of related proteins with weak sequence identity using secondary structure information

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=540069

In Arabidopsis thaliana, 1% of the genome codes for a novel protein family unique to plants

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=540069

Evaluation of gene prediction software using a genomic data set: application to Arabidopsis thaliana sequences

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=540069

Identification and application of the concepts important for accurate and reliable protein secondary structure prediction

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=540069

Evidence for an ancient chromosomal duplication in Arabidopsis thaliana by sequencing and analyzing a 400-kb contig at the APETALA2 locus on chromosome 4.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=540069

Predicting functions from protein sequences--where are the bottlenecks?

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=540069

Predotar: A tool for rapidly screening proteomes for N-terminal targeting sequences

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=540069

Automatic annotation of protein function based on family identification

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=540069

Refined annotation of the Arabidopsis genome by complete expressed sequence tag mapping

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=540069

Annotation of the Arabidopsis genome

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=540069

Open annotation offers a democratic solution to genome sequencing

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=540069

SOPMA: significant improvements in protein secondary structure prediction by consensus prediction from multiple alignments.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=540069

The challenges of genome sequence annotation or "the devil is in the details"

28 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/15608279

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Modeling the percolation of annotation errors in a database of protein sequences

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/15608279

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKI115

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15608279%20AND%20SRC:MED&resulttype=core&format=json

6 January 2020

DBLP publication ID

journals/nar/AubourgBB05

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15608279%20AND%20SRC:MED&resulttype=core&format=json

6 January 2020

PubMed publication ID

15608279

1 reference