(Q33112262)

28041881

19 July 2017

title

Nipbl Interacts with Zfp609 and the Integrator Complex to Regulate Cortical Neuron Migration (English)

1 reference

28041881

19 July 2017

main subject

Zinc finger protein 609

1 reference

NIPBL cohesin loading factor

GOA release 2020-03-11

1 reference

GOA release 2020-03-11

author

Debbie van den Berg

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28041881%20AND%20SRC:MED&resulttype=core&format=json

9 June 2020

Roberta Azzarelli

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28041881%20AND%20SRC:MED&resulttype=core&format=json

9 June 2020

Jeroen Demmers

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28041881%20AND%20SRC:MED&resulttype=core&format=json

9 June 2020

8

François Guillemot

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28041881%20AND%20SRC:MED&resulttype=core&format=json

9 June 2020

5

Noelia Urbán

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28041881%20AND%20SRC:MED&resulttype=core&format=json

9 June 2020

author name string

Koji Oishi

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28041881%20AND%20SRC:MED&resulttype=core&format=json

9 June 2020

Ben Martynoga

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28041881%20AND%20SRC:MED&resulttype=core&format=json

9 June 2020

Dick H W Dekkers

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28041881%20AND%20SRC:MED&resulttype=core&format=json

9 June 2020

language of work or name

English

0 references

publication date

20 December 2016

1 reference

19 July 2017

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28041881%20AND%20SRC:MED&resulttype=core&format=json

9 June 2020

volume

93

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28041881%20AND%20SRC:MED&resulttype=core&format=json

9 June 2020

issue

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28041881%20AND%20SRC:MED&resulttype=core&format=json

9 June 2020

page(s)

348-361

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28041881%20AND%20SRC:MED&resulttype=core&format=json

Regulation of neuronal migration, an emerging topic in autism spectrum disorders

9 June 2020

cites work

1 reference

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Integrator mediates the biogenesis of enhancer RNAs.

14 July 2018

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PAF1, a Molecular Regulator of Promoter-Proximal Pausing by RNA Polymerase II

14 July 2018

1 reference

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14 July 2018

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Germline gain-of-function mutations in AFF4 cause a developmental syndrome functionally linking the super elongation complex and cohesin

14 July 2018

1 reference

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The Integrator complex controls the termination of transcription at diverse classes of gene targets

14 July 2018

1 reference

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Ankrd11 is a chromatin regulator involved in autism that is essential for neural development

14 July 2018

1 reference

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Integrator complex regulates NELF-mediated RNA polymerase II pause/release and processivity at coding genes.

14 July 2018

1 reference

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Characterization of the neural stem cell gene regulatory network identifies OLIG2 as a multifunctional regulator of self-renewal

14 July 2018

1 reference

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Integrator regulates transcriptional initiation and pause release following activation

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5263256

eulerAPE: drawing area-proportional 3-Venn diagrams using ellipses

14 July 2018

1 reference

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14 July 2018

1 reference

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An antagonistic interaction between PlexinB2 and Rnd3 controls RhoA activity and cortical neuron migration

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5263256

A cohesin-independent role for NIPBL at promoters provides insights in CdLS.

14 July 2018

1 reference

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Control of transcriptional elongation

14 July 2018

1 reference

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Cohesin-based chromatin interactions enable regulated gene expression within preexisting architectural compartments

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5263256

Reduction of Nipbl impairs cohesin loading locally and affects transcription but not cohesion-dependent functions in a mouse model of Cornelia de Lange Syndrome

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5263256

The X-linked intellectual disability protein PHF6 associates with the PAF1 complex and regulates neuronal migration in the mammalian brain.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5263256

Architectural protein subclasses shape 3D organization of genomes during lineage commitment

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5263256

Reciprocal regulation of Rag expression in thymocytes by the zinc-finger proteins, Zfp608 and Zfp609.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5263256

HDAC8 mutations in Cornelia de Lange syndrome affect the cohesin acetylation cycle

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5263256

The super elongation complex family of RNA polymerase II elongation factors: gene target specificity and transcriptional output

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5263256

Fast gapped-read alignment with Bowtie 2

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5263256

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5263256

Transcriptional programs in transient embryonic zones of the cerebral cortex defined by high-resolution mRNA sequencing

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5263256

MEME-ChIP: motif analysis of large DNA datasets

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5263256

Proneural transcription factors regulate different steps of cortical neuron migration through Rnd-mediated inhibition of RhoA signaling

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5263256

Mediator and cohesin connect gene expression and chromatin architecture

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5263256

GREAT improves functional interpretation of cis-regulatory regions

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5263256

c-Myc regulates transcriptional pause release

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5263256

An Oct4-centered protein interaction network in embryonic stem cells

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5263256

Streamlined analysis schema for high-throughput identification of endogenous protein complexes

14 July 2018

1 reference

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Direct conversion of fibroblasts to functional neurons by defined factors

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5263256

Cohesin is required for higher-order chromatin conformation at the imprinted IGF2-H19 locus

14 July 2018

1 reference

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Molecular layers underlying cytoskeletal remodelling during cortical development

14 July 2018

1 reference

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Cornelia de Lange syndrome, cohesin, and beyond

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5263256

Multiple organ system defects and transcriptional dysregulation in the Nipbl(+/-) mouse, a model of Cornelia de Lange Syndrome

14 July 2018

1 reference

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A versatile viral system for expression and depletion of proteins in mammalian cells

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5263256

Transcriptional dysregulation in NIPBL and cohesin mutant human cells

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5263256

New trends in neuronal migration disorders

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5263256

Neuronal migration disorders

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5263256

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5263256

BioVenn - a web application for the comparison and visualization of biological lists using area-proportional Venn diagrams

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5263256

Model-based analysis of ChIP-Seq (MACS)

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5263256

A drug-inducible system for direct reprogramming of human somatic cells to pluripotency

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5263256

Neurogenin 2 controls cortical neuron migration through regulation of Rnd2.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5263256

Drosophila brakeless interacts with atrophin and is required for tailless-mediated transcriptional repression in early embryos

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5263256

Core transcriptional regulatory circuitry in human embryonic stem cells

14 July 2018

1 reference

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Niche-independent symmetrical self-renewal of a mammalian tissue stem cell

14 July 2018

1 reference

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Exponentially modified protein abundance index (emPAI) for estimation of absolute protein amount in proteomics by the number of sequenced peptides per protein

14 July 2018

1 reference

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Cohesin relocation from sites of chromosomal loading to places of convergent transcription

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5263256

Mutations in PHF6 are associated with Börjeson-Forssman-Lehmann syndrome

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5263256

Abnormal turning behavior in Drosophila larvae. Identification and molecular analysis of scribbler (sbb)

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5263256

brakeless is required for photoreceptor growth-cone targeting in Drosophila

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5263256

Cohesins: chromosomal proteins that prevent premature separation of sister chromatids

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5263256

Accurate transcription initiation by RNA polymerase II in a soluble extract from isolated mammalian nuclei

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5263256

Broadening of cohesinopathies: exome sequencing identifies mutations in ANKRD11 in two patients with Cornelia de Lange-overlapping phenotype.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5263256

Hidden mutations in Cornelia de Lange syndrome limitations of sanger sequencing in molecular diagnostics.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5263256

DSIF and NELF interact with Integrator to specify the correct post-transcriptional fate of snRNA genes.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5263256

Non-hyperpolarizing GABAB receptor activation regulates neuronal migration and neurite growth and specification by cAMP/LKB1.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5263256

Epilepsy in patients with Cornelia de Lange syndrome: a clinical series.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5263256

Premature chromatid separation is not a useful diagnostic marker for Cornelia de Lange syndrome.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5263256

Semaphorin-3A guides radial migration of cortical neurons during development.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5263256

Turning behavior in Drosophila larvae: a role for the small scribbler transcript.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5263256

GABA(B) receptors mediate motility signals for migrating embryonic cortical cells

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5263256

Efficient in utero gene transfer system to the developing mouse brain using electroporation: visualization of neuronal migration in the developing cortex.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5263256

GABA receptor antagonists modulate postmitotic cell migration in slice cultures of embryonic rat cortex

31 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/28041881

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1016/J.NEURON.2016.11.047

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28041881%20AND%20SRC:MED&resulttype=core&format=json

9 June 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28041881%20AND%20SRC:MED&resulttype=core&format=json

9 June 2020

28041881

1 reference