(Q33195458)

23 July 2017

Interactions of hydrophobic peptides with lipid bilayers: Monte Carlo simulations with M2delta (English)

1 reference

23 July 2017

1 reference

1 reference

Nir Ben-Tal

4

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Türkan Haliloğlu

series ordinal

3

object named as

Turkan Haliloglu

1 reference

23 July 2017

1

Amit Kessel

1 reference

23 July 2017

2

Dalit Shental-Bechor

1 reference

PubMed ID

14645040

23 July 2017

language of work or name

English

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publication date

1 December 2003

1 reference

23 July 2017

1 reference

23 July 2017

85

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23 July 2017

6

1 reference

23 July 2017

3431-3444

1 reference

Transmembrane helix predictions revisited

23 July 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303652

Local energy landscape flattening: parallel hyperbolic Monte Carlo sampling of protein folding.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303652

Interaction of cardiotoxins with membranes: a molecular modeling study

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303652

A Monte Carlo study of peptide insertion into lipid bilayers: equilibrium conformations and insertion mechanisms

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303652

Conformational dynamics of subtilisin-chymotrypsin inhibitor 2 complex by coarse-grained simulations

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303652

Structure of lipid bilayers

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303652

Calculations suggest a pathway for the transverse diffusion of a hydrophobic peptide across a lipid bilayer

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303652

Structure and dynamics of the pore-lining helix of the nicotinic receptor: MD simulations in water, lipid bilayers, and transbilayer bundles

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303652

Continuum solvent model calculations of alamethicin-membrane interactions: thermodynamic aspects

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303652

Membrane protein folding and stability: physical principles

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303652

A solvent model for simulations of peptides in bilayers. II. Membrane-spanning alpha-helices.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303652

A solvent model for simulations of peptides in bilayers. I. Membrane-promoting alpha-helix formation

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303652

Structures of the M2 channel-lining segments from nicotinic acetylcholine and NMDA receptors by NMR spectroscopy

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303652

Molecular theory of lipid-protein interaction and the Lalpha-HII transition

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303652

Effect of lipid characteristics on the structure of transmembrane proteins

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303652

Energetics of inclusion-induced bilayer deformations

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303652

Short-range conformational energies, secondary structure propensities, and recognition of correct sequence-structure matches

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303652

Efficient characterization of collective motions and interresidue correlations in proteins by low-resolution simulations.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303652

Coordination geometry of nonbonded residues in globular proteins

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303652

Simulation studies of alamethicin-bilayer interactions

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303652

Insertion and hairpin formation of membrane proteins: a Monte Carlo study

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303652

Statistical thermodynamic analysis of peptide and protein insertion into lipid membranes

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303652

Free-energy determinants of alpha-helix insertion into lipid bilayers

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303652

A Monte Carlo model of fd and Pf1 coat proteins in lipid membranes

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303652

Insertion of peptide chains into lipid membranes: an off-lattice Monte Carlo dynamics model

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303652

A molecular model for lipid-protein interaction in membranes: the role of hydrophobic mismatch

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303652

Stability of alpha-helices

14 July 2018

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303652

14 July 2018

https://api.crossref.org/works/10.1016%2FS0006-3495%2803%2974765-1

Classical electrostatics in biology and chemistry

7 January 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303652

The spontaneous insertion of proteins into and across membranes: the helical hairpin hypothesis

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303652

A simple method for displaying the hydropathic character of a protein

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303652

Stability of "salt bridges" in membrane proteins

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303652

Mattress model of lipid-protein interactions in membranes

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303652

The nature of the hydrophobic binding of small peptides at the bilayer interface: implications for the insertion of transbilayer helices

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303652

Calculation of deformation energies and conformations in lipid membranes containing gramicidin channels

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303652

The mechanism of alpha-helix formation by peptides

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303652

Peptide-bilayer interactions: simulations of dermaseptin B, an antimicrobial peptide.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303652

Coarse-grained simulations of conformational dynamics of proteins: application to apomyoglobin

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303652

IMPALA: a simple restraint field to simulate the biological membrane in molecular structure studies.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303652

Orientations of amphipathic helical peptides in membrane bilayers determined by solid-state NMR spectroscopy

31 October 2018

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2803%2974765-1

Stability of an Ion Channel in Lipid Bilayers: Implicit Solvent Model Calculations with Gramicidin†

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2803%2974765-1

Monte Carlo simulations of voltage-driven translocation of a signal sequence

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2803%2974765-1

Conformational dynamics of chymotrypsin inhibitor 2 by coarse-grained simulations

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2803%2974765-1

Computational study of lipid-destabilizing protein fragments: Towards a comprehensive view of tilted peptides

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2803%2974765-1

Equation of State Calculations by Fast Computing Machines

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2803%2974765-1

Theory of the Phase Transition between Helix and Random Coil in Polypeptide Chains

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2803%2974765-1

10.1016/S0006-3495(03)74765-1

7 January 2021

Identifiers

DOI

1 reference

23 July 2017

1 reference

23 July 2017

1 reference

PubMed ID

14645040