(Q33250344)

24 July 2017

Composite Module Analyst: identification of transcription factor binding site combinations using genetic algorithm (English)

1 reference

24 July 2017

1 reference

D Shtokalo

2

0 references

Edgar Wingender

object named as

E Wingender

8

0 references

author name string

T Waleev

1

1 reference

24 July 2017

T Konovalova

3

1 reference

24 July 2017

N Voss

4

1 reference

24 July 2017

E Cheremushkin

5

1 reference

24 July 2017

P Stegmaier

6

1 reference

24 July 2017

O Kel-Margoulis

7

1 reference

24 July 2017

A Kel

9

1 reference

24 July 2017

language of work or name

English

0 references

publication date

1 July 2006

1 reference

24 July 2017

Nucleic Acids Research

1 reference

24 July 2017

34

1 reference

24 July 2017

Web Server issue

1 reference

24 July 2017

W541-5

1 reference

TRANSFAC and its module TRANSCompel: transcriptional gene regulation in eukaryotes

24 July 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538785

Construction of predictive promoter models on the example of antibacterial response of human epithelial cells

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538785

Genome-wide prediction and analysis of function-specific transcription factor binding sites.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538785

A novel computational approach for the prediction of networked transcription factors of aryl hydrocarbon-receptor-regulated genes.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538785

Computational detection of cis -regulatory modules.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538785

Human housekeeping genes are compact

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538785

MATCH: A tool for searching transcription factor binding sites in DNA sequences

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538785

TRANSCompel: a database on composite regulatory elements in eukaryotic genes.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538785

BioProspector: discovering conserved DNA motifs in upstream regulatory regions of co-expressed genes.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538785

Molecular and in silico characterization of a promoter module and C/EBP element that mediate LPS-induced RANTES/CCL5 expression in monocytic cells.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538785

Nuclear factor kappaB-dependent mechanisms coordinate the synergistic effect of PMA and cytokines on the induction of superoxide dismutase 2

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538785

ATF and Jun transcription factors, acting through an Ets/CRE promoter module, mediate lipopolysaccharide inducibility of the chemokine RANTES in monocytic Mono Mac 6 cells

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538785

Discovering regulatory elements in non-coding sequences by analysis of spaced dyads

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538785

The early growth response protein (EGR-1) regulates interleukin-2 transcription by synergistic interaction with the nuclear factor of activated T cells

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538785

Identification of regulatory regions which confer muscle-specific gene expression.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538785

Locus control regions of mammalian beta-globin gene clusters: combining phylogenetic analyses and experimental results to gain functional insights

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538785

Analysis of the distribution of binding sites for a tissue-specific transcription factor in the vertebrate genome

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538785

Transcriptional profiling of IKK2/NF-kappa B- and p38 MAP kinase-dependent gene expression in TNF-alpha-stimulated primary human endothelial cells

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538785

A probabilistic method to detect regulatory modules.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538785

Automatic annotation of genomic regulatory sequences by searching for composite clusters.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538785

Computer-assisted identification of cell cycle-related genes: new targets for E2F transcription factors

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538785

A Discriminative Model for Identifying Spatial cis-Regulatory Modules

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538785

Finding composite regulatory patterns in DNA sequences

31 October 2018

1 reference

12 December 2020

Identifying target sites for cooperatively binding factors

1 reference

12 December 2020

Muscle actin genes: a first step towards computational classification of tissue specific promoters

1 reference

12 December 2020

Recognition of NFATp/AP-1 composite elements within genes induced upon the activation of immune cells

1 reference

12 December 2020

Composite Module Analyst: a fitness-based tool for identification of transcription factor binding site combinations

1 reference

12 December 2020

Identifiers

DOI

10.1093/NAR/GKL342

1 reference

journals/nar/WaleevSKVCSKWK06

24 July 2017

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

24 July 2017

1 reference