(Q33251431)

24 July 2017

Reciprocal illumination in the gene content tree of life (English)

1 reference

24 July 2017

2

Rob DeSalle

1 reference

24 July 2017

E Kurt Lienau

1

1 reference

PubMed ID

16861208

24 July 2017

Jeffrey A Rosenfeld

series ordinal

3

1 reference

PubMed ID

16861208

24 July 2017

Paul J Planet

series ordinal

4

1 reference

24 July 2017

1 June 2006

1 reference

24 July 2017

1 reference

24 July 2017

55

1 reference

24 July 2017

3

1 reference

24 July 2017

441-453

1 reference

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

24 July 2017

1 reference

https://api.crossref.org/works/10.1080%2F10635150600697416

Protein sequence databases

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150600697416

Evolutionary analysis by whole-genome comparisons

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150600697416

Use of logic relationships to decipher protein network organization

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150600697416

Eubacterial phylogeny based on translational apparatus proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150600697416

An emerging phylogenetic core of Archaea: phylogenies of transcription and translation machineries converge following addition of new genome sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150600697416

Nanoarchaea: representatives of a novel archaeal phylum or a fast-evolving euryarchaeal lineage related to Thermococcales?

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150600697416

Universal trees based on large combined protein sequence data sets.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150600697416

Inferring genome trees by using a filter to eliminate phylogenetically discordant sequences and a distance matrix based on mean normalized BLASTP scores

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150600697416

Concepts and tests of homology in the cladistic paradigm

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150600697416

The universal ancestor and the ancestor of bacteria were hyperthermophiles

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150600697416

Increased congruence does not necessarily indicate increased phylogenetic accuracy--the behavior of the incongruence length difference test in mixed-model analyses.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150600697416

The consistent phylogenetic signal in genome trees revealed by reducing the impact of noise.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150600697416

Phylogenetic analysis of beta-tubulin sequences from amitochondrial protozoa.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150600697416

The RecA protein as a model molecule for molecular systematic studies of bacteria: comparison of trees of RecAs and 16S rRNAs from the same species

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150600697416

THE RETENTION INDEX AND THE RESCALED CONSISTENCY INDEX

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150600697416

A Successive Approximations Approach to Character Weighting

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150600697416

Whole genome-based phylogenetic analysis of free-living microorganisms

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150600697416

Evidence for loss of mitochondria in Microsporidia from a mitochondrial-type HSP70 in Nosema locustae.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150600697416

Estimating Character Weights during Tree Search

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150600697416

Self-Weighted Optimization: Tree Searches and Character State Reconstructions under Implied Transformation Costs

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150600697416

Weighted genome trees: refinements and applications

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150600697416

A hybrid clustering approach to recognition of protein families in 114 microbial genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150600697416

A mitochondrial Hsp70 orthologue in Vairimorpha necatrix: molecular evidence that microsporidia once contained mitochondria

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150600697416

Microsporidia are related to Fungi: evidence from the largest subunit of RNA polymerase II and other proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150600697416

Using homolog groups to create a whole-genomic tree of free-living organisms: an update.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150600697416

A new phylum of Archaea represented by a nanosized hyperthermophilic symbiont

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150600697416

MRBAYES: Bayesian inference of phylogenetic trees

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150600697416

Phylogenetic trees based on gene content

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150600697416

Complete nucleotide sequences of the genes encoding translation elongation factors 1 alpha and 2 from a microsporidian parasite, Glugea plecoglossi: implications for the deepest branching of eukaryotes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150600697416

Protein phylogeny of translation elongation factor EF-1 alpha suggests microsporidians are extremely ancient eukaryotes

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150600697416

Genome sequence and gene compaction of the eukaryote parasite Encephalitozoon cuniculi

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150600697416

Congruent evidence from alpha-tubulin and beta-tubulin gene phylogenies for a zygomycete origin of microsporidia.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150600697416

Alpha-tubulin from early-diverging eukaryotic lineages and the evolution of the tubulin family.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150600697416

Quantitative Phyletics and the Evolution of Anurans

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150600697416

Performance of maximum parsimony and likelihood phylogenetics when evolution is heterogeneous

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150600697416

Large scale hierarchical clustering of protein sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150600697416

Eocytes: a new ribosome structure indicates a kingdom with a close relationship to eukaryotes

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150600697416

Deriving the genomic tree of life in the presence of horizontal gene transfer: conditioned reconstruction

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150600697416

Uninformative characters and apparent conflict between molecules and morphology.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150600697416

Small subunit ribosomal RNA+ of Hexamita inflata and the quest for the first branch in the eukaryotic tree

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150600697416

Whole-genome trees based on the occurrence of folds and orthologs: implications for comparing genomes on different levels

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150600697416

Detecting protein function and protein-protein interactions from genome sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150600697416

The Parsimony Ratchet, a New Method for Rapid Parsimony Analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150600697416

The use of gene clusters to infer functional coupling

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150600697416

DIVCLUS: an automatic method in the GEANFAMMER package that finds homologous domains in single- and multi-domain proteins.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150600697416

Assigning protein functions by comparative genome analysis: Protein phylogenetic profiles

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150600697416

Microsporidia, amitochondrial protists, possess a 70-kDa heat shock protein gene of mitochondrial evolutionary origin

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150600697416

Nanoarchaeum equitans creates functional tRNAs from separate genes for their 5'- and 3'-halves.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150600697416

Evidence that eukaryotes and eocyte prokaryotes are immediate relatives

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150600697416

The ring of life provides evidence for a genome fusion origin of eukaryotes

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150600697416

Genome phylogeny based on gene content

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150600697416

A genomic perspective on protein families

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150600697416

The COG database: new developments in phylogenetic classification of proteins from complete genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150600697416

Phylogenetic analysis of the complete genome sequence of Encephalitozoon cuniculi supports the fungal origin of microsporidia and reveals a high frequency of fast-evolving genes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150600697416

Ribosomal RNA sequence suggests microsporidia are extremely ancient eukaryotes

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150600697416

The genome of Nanoarchaeum equitans: insights into early archaeal evolution and derived parasitism

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150600697416

Elision: a method for accommodating multiple molecular sequence alignments with alignment-ambiguous sites

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150600697416

Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and Eucarya

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150600697416

Phylogeny of Firmicutes with special reference to Mycoplasma (Mollicutes) as inferred from phosphoglycerate kinase amino acid sequence data

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150600697416

Genome trees and the tree of life

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150600697416

Genome trees constructed using five different approaches suggest new major bacterial clades

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150600697416

Genome alignment, evolution of prokaryotic genome organization, and prediction of gene function using genomic context

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150600697416

Phylogeny determined by protein domain content

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150600697416

A non-hyperthermophilic ancestor for Bacteria

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150600697416

Eukaryotic ribosomes that lack a 5.8S RNA

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150600697416

10.1080/10635150600697416

21 January 2018

Identifiers

DOI

1 reference

24 July 2017

1 reference

PubMed ID

16861208