(Q33273709)

25 July 2017

title

Characterization of relationships between transcriptional units and operon structures in Bacillus subtilis and Escherichia coli (English)

1 reference

25 July 2017

1 reference

1 reference

Shujiro Okuda

1

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Shuichi Kawashima

object named as

Shuichi Kawashima

2

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author name string

Kazuo Kobayashi

3

1 reference

25 July 2017

Naotake Ogasawara

4

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25 July 2017

Minoru Kanehisa

5

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25 July 2017

Susumu Goto

6

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25 July 2017

language of work or name

English

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publication date

13 February 2007

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25 July 2017

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25 July 2017

volume

8

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25 July 2017

page(s)

48

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Creative Commons Attribution 2.0 Generic

25 July 2017

copyright license

start time

13 February 2007

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

1 reference

April 2022 Public Data File from Crossref

cites work

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SigM, an extracytoplasmic function sigma factor of Bacillus subtilis, is activated in response to cell wall antibiotics, ethanol, heat, acid, and superoxide stress

21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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Combined transcriptome and proteome analysis as a powerful approach to study genes under glucose repression in Bacillus subtilis.

21 June 2018

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21 June 2018

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21 June 2018

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Operons in Escherichia coli: genomic analyses and predictions

21 June 2018

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Modeling and predicting transcriptional units of Escherichia coli genes using hidden Markov models

21 June 2018

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The use of gene clusters to infer functional coupling

21 June 2018

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Conservation of gene order: a fingerprint of proteins that physically interact

21 June 2018

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21 June 2018

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The Bacillus subtilis clpC operon encodes DNA repair and competence proteins

21 June 2018

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Identification and characterization of transcripts from the biotin biosynthetic operon of Bacillus subtilis

21 June 2018

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Regulators of aerobic and anaerobic respiration in Bacillus subtilis

21 June 2018

1 reference

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Identification of common molecular subsequences

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1808063

Searching protein sequence libraries: Comparison of the sensitivity and selectivity of the Smith-Waterman and FASTA algorithms

21 June 2018

1 reference

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Conservation of gene co-regulation between two prokaryotes: Bacillus subtilis and Escherichia coli.

21 June 2018

1 reference

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A fuzzy guided genetic algorithm for operon prediction

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1808063

Operon prediction without a training set.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1808063

Predicting the operon structure of Bacillus subtilis using operon length, intergene distance, and gene expression information.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1808063

Organization and expression of the Bacillus subtilis sigY operon.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1808063

Using functional and organizational information to improve genome-wide computational prediction of transcription units on pathway-genome databases

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1808063

A Bayesian network approach to operon prediction

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1808063

A probabilistic learning approach to whole-genome operon prediction.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1808063

Evolutionary instability of operon structures disclosed by sequence comparisons of complete microbial genomes.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1808063

Alternate promoters direct stress-induced transcription of the Bacillus subtilis clpC operon

31 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17298663

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identification and transcriptional analysis of new members of the sigmaB regulon in Bacillus subtilis

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17298663

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2164-8-48

1 reference

Dimensions Publication ID

25 July 2017

0 references

1 reference

25 July 2017

1 reference