(Q33281712)

25 July 2017

title

BranchClust: a phylogenetic algorithm for selecting gene families (English)

1 reference

25 July 2017

1 reference

Maria S Poptsova

1

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author name string

J Peter Gogarten

series ordinal

2

1 reference

25 July 2017

publication date

10 April 2007

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25 July 2017

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25 July 2017

volume

8

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25 July 2017

page(s)

120

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Creative Commons Attribution 2.0 Generic

25 July 2017

copyright license

start time

10 April 2007

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

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April 2022 Public Data File from Crossref

exact match

https://scigraph.springernature.com/pub.10.1186/1471-2105-8-120

0 references

cites work

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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Reductive evolution suggested from the complete genome sequence of a plant-pathogenic phytoplasma

21 June 2018

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A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood

21 June 2018

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An improved probability mapping approach to assess genome mosaicism

21 June 2018

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Prokaryotic evolution in light of gene transfer

21 June 2018

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TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing

21 June 2018

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Bootstrap, Bayesian probability and maximum likelihood mapping: exploring new tools for comparative genome analyses

21 June 2018

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An efficient algorithm for large-scale detection of protein families

21 June 2018

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Automatic clustering of orthologs and in-paralogs from pairwise species comparisons

21 June 2018

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Type III secretion systems and pathogenicity islands

21 June 2018

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Horizontal transfer of archaeal genes into the deinococcaceae: detection by molecular and computer-based approaches

21 June 2018

1 reference

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Lateral gene transfer and the nature of bacterial innovation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1853112

Gene content phylogeny of herpesviruses

21 June 2018

1 reference

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Homology a personal view on some of the problems

21 June 2018

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HOBACGEN: database system for comparative genomics in bacteria

21 June 2018

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Profile hidden Markov models

21 June 2018

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Iterated profile searches with PSI-BLAST--a tool for discovery in protein databases

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1853112

A genomic perspective on protein families

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1853112

Horizontal transfer of ATPase genes--the tree of life becomes a net of life

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1853112

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1853112

SCOP: a structural classification of proteins database for the investigation of sequences and structures

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1853112

The neighbor-joining method: a new method for reconstructing phylogenetic trees

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1853112

Progressive sequence alignment as a prerequisite to correct phylogenetic trees

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1853112

Evolution of the vacuolar H+-ATPase: implications for the origin of eukaryotes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1853112

Basic local alignment search tool

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1853112

Molecular cloning of genes encoding major two subunits of a eubacterial V-type ATPase from Thermus thermophilus

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1853112

Salmonella typhimurium mutants defective in flagellar filament regrowth and sequence similarity of FliI to F0F1, vacuolar, and archaebacterial ATPase subunits

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1853112

Evolution of proton pumping ATPases: Rooting the tree of life

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1853112

Rooting the tree of life using nonubiquitous genes

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1853112

Distribution of F- and A/V-type ATPases in Thermus scotoductus and other closely related species

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1853112

Ancient gene duplications and the root(s) of the tree of life.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1853112

A simple algorithm to infer gene duplication and speciation events on a gene tree.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1853112

The closest BLAST hit is often not the nearest neighbor.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1853112

Whole-Genome Analysis of Photosynthetic Prokaryotes

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1853112

Orthology, paralogy and proposed classification for paralog subtypes

31 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17425803

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2105-8-120

1 reference

journals/bmcbi/PoptsovaG07

25 July 2017

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

1 reference

25 July 2017

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