(Q33282752)

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Maximum entropy reconstruction of joint phi, psi-distribution with a coil-library prior: the backbone conformation of the peptide hormone motilin in aqueous solution from phi and psi-dependent J-couplings

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Europe PubMed Central

PubMed publication ID

25 July 2017

Maximum entropy reconstruction of joint phi, psi-distribution with a coil-library prior: the backbone conformation of the peptide hormone motilin in aqueous solution from phi and psi-dependent J-couplings (English)

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Europe PubMed Central

PubMed publication ID

25 July 2017

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Risto Tanner

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Jüri Jarvet

2

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Julia Smirnova

5

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author name string

Tariq Massad

1

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Europe PubMed Central

PubMed publication ID

25 July 2017

Katrin Tomson

4

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Europe PubMed Central

PubMed publication ID

25 July 2017

Peep Palumaa

6

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Europe PubMed Central

PubMed publication ID

25 July 2017

Mariko Sugai

7

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Europe PubMed Central

PubMed publication ID

25 July 2017

Toshiyuki Kohno

8

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Europe PubMed Central

PubMed publication ID

25 July 2017

Kalju Vanatalu

9

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Europe PubMed Central

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25 July 2017

Peter Damberg

10

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Europe PubMed Central

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25 July 2017

publication date

26 April 2007

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Europe PubMed Central

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25 July 2017

Journal of Biomolecular NMR

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Europe PubMed Central

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25 July 2017

38

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Europe PubMed Central

PubMed publication ID

25 July 2017

2

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Europe PubMed Central

PubMed publication ID

25 July 2017

107-123

1 reference

Europe PubMed Central

PubMed publication ID

25 July 2017

Temperature dependence of anisotropic protein backbone dynamics

1 reference

https://pubmed.ncbi.nlm.nih.gov/17458509

12 December 2020

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Limited variations in 15N CSA magnitudes and orientations in ubiquitin are revealed by joint analysis of longitudinal and transverse NMR relaxation

1 reference

https://pubmed.ncbi.nlm.nih.gov/17458509

12 December 2020

based on heuristic

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Intrinsic phi, psi propensities of amino acids, derived from the coil regions of known structures

1 reference

https://pubmed.ncbi.nlm.nih.gov/17458509

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

1H nuclear-magnetic-resonance studies of the molecular conformation of monomeric glucagon in aqueous solution

1 reference

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12 December 2020

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A new general method for the biosynthesis of stable isotope-enriched peptides using a decahistidine-tagged ubiquitin fusion system: an application to the production of mastoparan-X uniformly enriched with 15N and 15N/13C.

1 reference

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12 December 2020

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Adaptastat--a new method for optimising of bacterial growth conditions in continuous culture: Interactive substrate limitation based on dissolved oxygen measurement

1 reference

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12 December 2020

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Structural studies of tau protein and Alzheimer paired helical filaments show no evidence for beta-structure

1 reference

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Backbone dynamics of a free and phosphopeptide-complexed Src homology 2 domain studied by 15N NMR relaxation

1 reference

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12 December 2020

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Modulation of intrinsic phi,psi propensities of amino acids by neighbouring residues in the coil regions of protein structures: NMR analysis and dissection of a beta-hairpin peptide.

1 reference

https://pubmed.ncbi.nlm.nih.gov/17458509

12 December 2020

based on heuristic

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Motilin-bicelle interactions: membrane position and translational diffusion

1 reference

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12 December 2020

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Intrinsically unstructured proteins: re-assessing the protein structure-function paradigm

1 reference

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12 December 2020

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Structural characterization of unfolded states of apomyoglobin using residual dipolar couplings

1 reference

https://pubmed.ncbi.nlm.nih.gov/17458509

12 December 2020

based on heuristic

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Protein disorder prediction: implications for structural proteomics

1 reference

https://pubmed.ncbi.nlm.nih.gov/17458509

12 December 2020

based on heuristic

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The concept of a random coil. Residual structure in peptides and denatured proteins

1 reference

https://pubmed.ncbi.nlm.nih.gov/17458509

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Denatured states of ribonuclease A have compact dimensions and residual secondary structure

1 reference

https://pubmed.ncbi.nlm.nih.gov/17458509

12 December 2020

based on heuristic

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NMR solution structure and dynamics of motilin in isotropic phospholipid bicellar solution

1 reference

https://pubmed.ncbi.nlm.nih.gov/17458509

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Structure validation by Calpha geometry: phi,psi and Cbeta deviation

1 reference

https://pubmed.ncbi.nlm.nih.gov/17458509

12 December 2020

based on heuristic

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D-amino acid and alanine scans of the bioactive portion of porcine motilin

1 reference

https://pubmed.ncbi.nlm.nih.gov/17458509

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The solution structure of motilin from NMR distance constraints, distance geometry, molecular dynamics, and an iterative full relaxation matrix refinement.

1 reference

https://pubmed.ncbi.nlm.nih.gov/17458509

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Intrinsic disorder and protein function

1 reference

https://pubmed.ncbi.nlm.nih.gov/17458509

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Analysis of main chain torsion angles in proteins: prediction of NMR coupling constants for native and random coil conformations

1 reference

https://pubmed.ncbi.nlm.nih.gov/17458509

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Contributions to conformational entropy arising from bond vector fluctuations measured from NMR-derived order parameters: application to protein folding

1 reference

https://pubmed.ncbi.nlm.nih.gov/17458509

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Persistence of native-like topology in a denatured protein in 8 M urea

1 reference

https://pubmed.ncbi.nlm.nih.gov/17458509

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Statistical coil model of the unfolded state: resolving the reconciliation problem

1 reference

https://pubmed.ncbi.nlm.nih.gov/17458509

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Comparison between the phi distribution of the amino acids in the protein database and NMR data indicates that amino acids have various phi propensities in the random coil conformation

1 reference

https://pubmed.ncbi.nlm.nih.gov/17458509

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Synthesis and in vitro evaluation of [Leu13]porcine motilin fragments

1 reference

https://pubmed.ncbi.nlm.nih.gov/17458509

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Dynamic and structural analysis of isotropically distributed molecular ensembles.

1 reference

https://pubmed.ncbi.nlm.nih.gov/17458509

12 December 2020

based on heuristic

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Helix, sheet, and polyproline II frequencies and strong nearest neighbor effects in a restricted coil library

1 reference

https://pubmed.ncbi.nlm.nih.gov/17458509

12 December 2020

based on heuristic

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Reassessment of the random coil conformation: vibrational CD study of proline oligopeptides and related polypeptides

1 reference

https://pubmed.ncbi.nlm.nih.gov/17458509

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Role of backbone solvation and electrostatics in generating preferred peptide backbone conformations: Distributions of phi

1 reference

https://pubmed.ncbi.nlm.nih.gov/17458509

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Defining Long-Range Order and Local Disorder in Native α-Synuclein Using Residual Dipolar Couplings

1 reference

https://pubmed.ncbi.nlm.nih.gov/17458509

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Natively unfolded proteins: a point where biology waits for physics

1 reference

https://pubmed.ncbi.nlm.nih.gov/17458509

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Is polyproline II a major backbone conformation in unfolded proteins?

1 reference

https://pubmed.ncbi.nlm.nih.gov/17458509

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Changes in calmodulin main-chain dynamics upon ligand binding revealed by cross-correlated NMR relaxation measurements

1 reference

https://pubmed.ncbi.nlm.nih.gov/17458509

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Polyproline II conformation is one of many local conformational states and is not an overall conformation of unfolded peptides and proteins.

1 reference

https://pubmed.ncbi.nlm.nih.gov/17458509

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The structure of "unstructured" regions in peptides and proteins: role of the polyproline II helix in protein folding and recognition

1 reference

https://pubmed.ncbi.nlm.nih.gov/17458509

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Attenuated T2 relaxation by mutual cancellation of dipole-dipole coupling and chemical shift anisotropy indicates an avenue to NMR structures of very large biological macromolecules in solution

1 reference

https://pubmed.ncbi.nlm.nih.gov/17458509

12 December 2020

based on heuristic

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The character of the stored molecules in chromaffin granules of the adrenal medulla: a nuclear magnetic resonance study

1 reference

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Glucose-limited fed-batch cultivation of Escherichia coli with computer-controlled fixed growth rate.

1 reference

https://pubmed.ncbi.nlm.nih.gov/17458509

12 December 2020

based on heuristic

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Conformation of Polypeptides and Proteins

1 reference

https://pubmed.ncbi.nlm.nih.gov/17458509

12 December 2020

based on heuristic

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Three-Dimensional Structure and Position of Porcine Motilin in Sodium Dodecyl Sulfate Micelles Determined by1H NMR†

1 reference

https://pubmed.ncbi.nlm.nih.gov/17458509

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Structural analysis of non-native states of proteins by NMR methods

1 reference

https://pubmed.ncbi.nlm.nih.gov/17458509

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

(13)C-(1)H NMR relaxation and fluorescence anisotropy decay study of tyrosine dynamics in motilin

1 reference

https://pubmed.ncbi.nlm.nih.gov/17458509

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Analysis of the structure of ribonuclease A in native and partially denatured states by time-resolved noradiative dynamic excitation energy transfer between site-specific extrinsic probes.

1 reference

https://pubmed.ncbi.nlm.nih.gov/17458509

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Polyproline II structure in proteins: identification by chiroptical spectroscopies, stability, and functions

1 reference

https://pubmed.ncbi.nlm.nih.gov/17458509

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Intrinsically unstructured proteins and their functions

1 reference

https://pubmed.ncbi.nlm.nih.gov/17458509

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Preferred peptide backbone conformations in the unfolded state revealed by the structure analysis of alanine-based (AXA) tripeptides in aqueous solution

1 reference

https://pubmed.ncbi.nlm.nih.gov/17458509

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The Protein Coil Library: a structural database of nonhelix, nonstrand fragments derived from the PDB.

1 reference

https://pubmed.ncbi.nlm.nih.gov/17458509

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Sequence-specific 1H NMR assignments and secondary structure of porcine motilin

1 reference

https://pubmed.ncbi.nlm.nih.gov/17458509

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Long-range interactions within a nonnative protein

1 reference

https://pubmed.ncbi.nlm.nih.gov/17458509

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Similarity of fluorescence lifetime distributions for single tryptophan proteins in the random coil state.

1 reference

https://pubmed.ncbi.nlm.nih.gov/17458509

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Intrinsically unstructured proteins

1 reference

https://pubmed.ncbi.nlm.nih.gov/17458509

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1007/S10858-007-9150-1

1 reference

Europe PubMed Central

PubMed publication ID

25 July 2017

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

25 July 2017

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