(Q33283537)

25 July 2017

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title

Molecular approaches: advantages and artifacts in assessing bacterial diversity (English)

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25 July 2017

author name string

Daniela Santos Pontes

1

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25 July 2017

Cláudia Iracema Lima-Bittencourt

2

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25 July 2017

Edmar Chartone-Souza

3

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25 July 2017

Andréa Maria Amaral Nascimento

4

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25 July 2017

publication date

3 May 2007

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Journal of Industrial Microbiology & Biotechnology

25 July 2017

published in

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25 July 2017

volume

34

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25 July 2017

issue

7

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25 July 2017

page(s)

463-473

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The relative contributions of recombination and mutation to the divergence of clones of Neisseria meningitidis

25 July 2017

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https://api.crossref.org/works/10.1007%2FS10295-007-0219-3

Protein-coding genes as molecular markers for ecologically distinct populations: the case of two Bacillus species

21 January 2018

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https://api.crossref.org/works/10.1007%2FS10295-007-0219-3

Identification and phylogeny of Enterobacter sakazakii relative to Enterobacter and Citrobacter Species

21 January 2018

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12 December 2020

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12 December 2020

Polyphasic Taxonomy of the Genus Vibrio: Numerical Taxonomy of Vibrio cholerae, Vibrio parahaemolyticus , and Related Vibrio Species

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12 December 2020

Application of multilocus sequence analysis (MLSA) for rapid identification of Enterococcus species based on rpoA and pheS genes

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12 December 2020

From natural products discovery to commercialization: a success story

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12 December 2020

rpoB-based microbial community analysis avoids limitations inherent in 16S rRNA gene intraspecies heterogeneity.

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12 December 2020

The identification of microorganisms by fluorescence in situ hybridisation

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12 December 2020

Identification of the bacterial community of maple sap by using amplified ribosomal DNA (rDNA) restriction analysis and rDNA sequencing

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12 December 2020

Direct cloning from enrichment cultures, a reliable strategy for isolation of complete operons and genes from microbial consortia

1 reference

12 December 2020

Identification of 16S ribosomal DNA-defined bacterial populations at a shallow submarine hydrothermal vent near Milos Island (Greece)

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12 December 2020

Discovery and classification of ecological diversity in the bacterial world: the role of DNA sequence data

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12 December 2020

Impact of culture-independent studies on the emerging phylogenetic view of bacterial diversity.

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12 December 2020

Bacterioplankton community diversity in a maritime Antarctic lake, determined by culture-dependent and culture-independent techniques

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12 December 2020

Rapid extraction and purification of environmental DNA for molecular cloning applications and molecular diversity studies

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12 December 2020

Typing of Staphylococcus aureus by amplification of the 16S-23S rRNA intergenic spacer sequences

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12 December 2020

Detection of methanotroph diversity on roots of submerged rice plants by molecular retrieval of pmoA, mmoX, mxaF, and 16S rRNA and ribosomal DNA, including pmoA-based terminal restriction fragment length polymorphism profiling

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12 December 2020

Diversity and seasonal variability of beta-Proteobacteria in biofilms of polluted rivers: analysis by temperature gradient gel electrophoresis and cloning

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12 December 2020

Whither or wither geomicrobiology in the era of 'community metagenomics'.

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12 December 2020

Use of a Single-Strand Specific Nuclease for Analysis of Bacterial and Plasmid Deoxyribonucleic Acid Homo- and Heteroduplexes

1 reference

12 December 2020

Phenotypic and genotypic characterization of antimicrobial resistance in German Escherichia coli isolates from cattle, swine and poultry

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12 December 2020

Prokaryotic diversity--magnitude, dynamics, and controlling factors

1 reference

12 December 2020

Development of a multilocus sequence typing method for analysis of Lactobacillus plantarum strains.

1 reference

12 December 2020

Genetic analysis of housekeeping genes reveals a deep-sea ecotype of Alteromonas macleodii in the Mediterranean Sea.

1 reference

12 December 2020

List of Bacterial Names with Standing in Nomenclature: a folder available on the Internet

1 reference

12 December 2020

Analysis of 16S rRNA and methane monooxygenase gene sequences reveals a novel group of thermotolerant and thermophilic methanotrophs, Methylocaldum gen. nov.

1 reference

12 December 2020

Prokaryotes: the unseen majority

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12 December 2020

Habitat, applications and genomics of the aerobic, thermophilic genus Geobacillus

1 reference

12 December 2020

Analysis of 16S-23S rRNA intergenic spacer regions of Vibrio cholerae and Vibrio mimicus

1 reference

12 December 2020

Database-driven multi locus sequence typing (MLST) of bacterial pathogens.

1 reference

12 December 2020

Culturability and In situ abundance of pelagic bacteria from the North Sea

1 reference

12 December 2020

Broad diversity of viable bacteria in ‘sterile’ (0.2 μm) filtered water

1 reference

12 December 2020

Multilocus sequence typing of Streptococcus pyogenes and the relationships between emm type and clone

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12 December 2020

Novel division level bacterial diversity in a Yellowstone hot spring

1 reference

12 December 2020

Identification of pathogenic Helicobacter species by chaperonin-60 differentiation on plastic DNA arrays

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12 December 2020

Description of Enterobacter ludwigii sp. nov., a novel Enterobacter species of clinical relevance

1 reference

12 December 2020

Bacteria are different: observations, interpretations, speculations, and opinions about the mechanisms of adaptive evolution in prokaryotes

1 reference

12 December 2020

Distribution and culturability of the uncultivated 'AGG58 cluster' of the Bacteroidetes phylum in aquatic environments

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12 December 2020

Bacterial species and speciation

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12 December 2020

Bacterial identification for publication: when is enough enough?

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12 December 2020

Biodiversity of vibrios

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12 December 2020

Levels of bacterial community diversity in four arid soils compared by cultivation and 16S rRNA gene cloning.

1 reference

12 December 2020

Genetic variation: molecular mechanisms and impact on microbial evolution

1 reference

12 December 2020

1 reference

12 December 2020

Molecular microbial ecology: land of the one-eyed king

1 reference

12 December 2020

Biodiversity-based identification and functional characterization of the mannose-specific adhesin of Lactobacillus plantarum.

1 reference

12 December 2020

Divergence and redundancy of 16S rRNA sequences in genomes with multiple rrn operons.

1 reference

12 December 2020

Palmitoylputrescine, an antibiotic isolated from the heterologous expression of DNA extracted from bromeliad tank water

1 reference

12 December 2020

Gene sequences useful for predicting relatedness of whole genomes in bacteria

1 reference

12 December 2020

Chitinases from uncultured marine microorganisms

1 reference

12 December 2020

Analysis of bacterial diversity in river biofilms using 16S rDNA PCR-DGGE: methodological settings and fingerprints interpretation

1 reference

12 December 2020

Effect of primers hybridizing to different evolutionarily conserved regions of the small-subunit rRNA gene in PCR-based microbial community analyses and genetic profiling

1 reference

12 December 2020

Impact of cultivation on characterisation of species composition of soil bacterial communities

1 reference

12 December 2020

Phylogenetic and metabolic diversity of bacteria degrading aromatic compounds under denitrifying conditions, and description of Thauera phenylacetica sp. nov., Thauera aminoaromatica sp. nov., and Azoarcus buckelii sp. nov.

1 reference

12 December 2020

Evaluation of primers and PCR conditions for the analysis of 16S rRNA genes from a natural environment

1 reference

12 December 2020

Identification of Mycobacterium species by multiple-fluorescence PCR-single-strand conformation polymorphism analysis of the 16S rRNA gene

1 reference

12 December 2020

Coupling of functional gene diversity and geochemical data from environmental samples

1 reference

12 December 2020

Utilization of the rpoB gene as a specific chromosomal marker for real-time PCR detection of Bacillus anthracis

1 reference

12 December 2020

Fuzzy species among recombinogenic bacteria

1 reference

12 December 2020

Phylogenetic and physiological diversity of microorganisms isolated from a deep greenland glacier ice core

1 reference

12 December 2020

Ecological significance of microdiversity: identical 16S rRNA gene sequences can be found in bacteria with highly divergent genomes and ecophysiologies

1 reference

12 December 2020

Direct isolation of functional genes encoding cellulases from the microbial consortia in a thermophilic, anaerobic digester maintained on lignocellulose

1 reference

12 December 2020

Microbial diversity: facts, problems and prospects

1 reference

12 December 2020

Microarray-based detection of 90 antibiotic resistance genes of gram-positive bacteria

1 reference

12 December 2020

Prospecting for novel biocatalysts in a soil metagenome

1 reference

12 December 2020

Population genetics of the nomenspecies Enterobacter cloacae

1 reference

12 December 2020

Molecular community analysis of microbial diversity

1 reference

12 December 2020

Comparative sequence analysis of the internal transcribed spacer 1 of Ochrobactrum species

1 reference

12 December 2020

The species concept for prokaryotes

1 reference

12 December 2020

Review and re-analysis of domain-specific 16S primers

1 reference

12 December 2020

A molecular phylogeny of enteric bacteria and implications for a bacterial species concept

1 reference

12 December 2020

Bacterial species determination from DNA-DNA hybridization by using genome fragments and DNA microarrays

1 reference

12 December 2020

Bacterial diversity in aquatic and other environments: what 16S rDNA libraries can tell us.

1 reference

12 December 2020

Opinion: Re-evaluating prokaryotic species

1 reference

12 December 2020

Direct amplification of nodD from community DNA reveals the genetic diversity of Rhizobium leguminosarum in soil.

1 reference

12 December 2020

Assessment of microbial community structure changes by amplified ribosomal DNA restriction analysis (ARDRA).

1 reference

12 December 2020

An ecological perspective on bacterial biodiversity

1 reference

12 December 2020

Modelling strategies for the industrial exploitation of lactic acid bacteria

1 reference

12 December 2020

Microbial biodiversity: approaches to experimental design and hypothesis testing in primary scientific literature from 1975 to 1999.

1 reference

12 December 2020

Development of a group-specific PCR combined with ARDRA for the identification of Bacillus species of environmental significance.

1 reference

12 December 2020

Isolating "uncultivable" microorganisms in pure culture in a simulated natural environment

1 reference

12 December 2020

The phylogeny of proteobacteria: relationships to other eubacterial phyla and eukaryotes

1 reference

12 December 2020

Search and discovery strategies for biotechnology: the paradigm shift

1 reference

12 December 2020

Metagenomics--the key to the uncultured microbes

1 reference

12 December 2020

Rapid identification of bacteria on the basis of polymerase chain reaction-amplified ribosomal DNA spacer polymorphisms

1 reference

12 December 2020

Development of a fast DNA-DNA hybridization method based on melting profiles in microplates.

1 reference

12 December 2020

Approaches to prokaryotic biodiversity: a population genetics perspective.

1 reference

12 December 2020

Aerococcus urinae: polyphasic characterization of the species

1 reference

12 December 2020

Metagenomic analysis reveals diverse polyketide synthase gene clusters in microorganisms associated with the marine sponge Discodermia dissoluta

1 reference

12 December 2020

Prokaryote diversity and taxonomy: current status and future challenges

1 reference

12 December 2020

Current bioremediation practice and perspective

1 reference

12 December 2020

Rapid identification of Campylobacter, Arcobacter, and Helicobacter isolates by PCR-restriction fragment length polymorphism analysis of the 16S rRNA gene

1 reference

12 December 2020

A natural species concept for prokaryotes

1 reference

12 December 2020

rrndb: the Ribosomal RNA Operon Copy Number Database

1 reference

12 December 2020

Construction and screening of metagenomic libraries derived from enrichment cultures: generation of a gene bank for genes conferring alcohol oxidoreductase activity on Escherichia coli

1 reference

12 December 2020

The Hawaiian Archipelago: a microbial diversity hotspot

1 reference

12 December 2020

Rhizobial 16S rRNA and dnaK genes: mosaicism and the uncertain phylogenetic placement of Rhizobium galegae

1 reference

12 December 2020

Metagenomic gene discovery: past, present and future.

1 reference

12 December 2020

Discordant Phylogenies within the rrn Loci of Rhizobia

1 reference

12 December 2020

Comparative metagenomics of microbial communities

1 reference

12 December 2020

Prokaryotic Genome Size and SSU rDNA Copy Number: Estimation of Microbial Relative Abundance from a Mixed Population

1 reference

12 December 2020

Polyphasic taxonomy, a consensus approach to bacterial systematics

1 reference

12 December 2020

Tapping into microbial diversity.

1 reference

12 December 2020

Metagenomics: genomic analysis of microbial communities

1 reference

12 December 2020

Nested PCR-denaturing gradient gel electrophoresis approach to determine the diversity of sulfate-reducing bacteria in complex microbial communities

1 reference

12 December 2020

Polyphasic study of Chryseobacterium strains isolated from diseased aquatic animals

1 reference

12 December 2020

Isolation of antibiotics turbomycin a and B from a metagenomic library of soil microbial DNA

1 reference

12 December 2020

Status of the Microbial Census

1 reference

12 December 2020

Environmental genomics, the big picture?

1 reference

12 December 2020

Genotypic and phenotypic heterogeneity of Streptococcus thermophilus strains isolated from dairy products

1 reference

12 December 2020

Homogeneity of the 16S rDNA sequence among geographically disparate isolates of Taylorella equigenitalis.

1 reference

12 December 2020

Multitude and temporal variability of ecological niches as indicated by the diversity of cultivated bacterioplankton.

1 reference

12 December 2020

Metagenomics: advances in ecology and biotechnology

1 reference

12 December 2020

Cloning the soil metagenome: a strategy for accessing the genetic and functional diversity of uncultured microorganisms

1 reference

12 December 2020

10.1007/S10295-007-0219-3

Identifiers

DOI

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25 July 2017

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