(Q33286786)

25 July 2017

title

Transient 2D IR spectroscopy of ubiquitin unfolding dynamics (English)

1 reference

25 July 2017

0 references

Kevin C Jones

3

0 references

Ziad Ganim

object named as

Ziad Ganim

series ordinal

2

0 references

Hoi Sung Chung

series ordinal

1

object named as

Hoi Sung Chung

1 reference

25 July 2017

4

Andrei Tokmakoff

1 reference

25 July 2017

language of work or name

English

0 references

publication date

5 June 2007

1 reference

Proceedings of the National Academy of Sciences of the United States of America

25 July 2017

published in

1 reference

25 July 2017

volume

104

1 reference

25 July 2017

issue

36

1 reference

25 July 2017

page(s)

14237-14242

1 reference

Transient two-dimensional IR spectrometer for probing nanosecond temperature-jump kinetics

25 July 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1964855

Two-dimensional vibrational optical probes for peptide fast folding investigation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1964855

Amide I vibrational dynamics of N-methylacetamide in polar solvents: the role of electrostatic interactions

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1964855

Spectral signatures of heterogeneous protein ensembles revealed by MD Simulations of 2DIR spectra.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1964855

Picosecond dynamics of a membrane protein revealed by 2D IR.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1964855

Simulation protocols for coherent femtosecond vibrational spectra of peptides

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1964855

Conformational changes during the nanosecond-to-millisecond unfolding of ubiquitin.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1964855

Differences in the folding transition state of ubiquitin indicated by phi and psi analyses

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1964855

The folding pathway of ubiquitin from all-atom molecular dynamics simulations

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1964855

Two-dimensional infrared spectroscopy of antiparallel beta-sheet secondary structure

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1964855

The fast protein folding problem

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1964855

What vibrations tell us about proteins.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1964855

Absolute comparison of simulated and experimental protein-folding dynamics

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1964855

Protein folding: the free energy surface

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1964855

Protein folding and unfolding at atomic resolution

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1964855

Two-dimensional infrared spectroscopy: a promising new method for the time resolution of structures

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1964855

Subpicosecond conformational dynamics of small peptides probed by two-dimensional vibrational spectroscopy

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1964855

From folding theories to folding proteins: a review and assessment of simulation studies of protein folding and unfolding

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1964855

Fast kinetics and mechanisms in protein folding

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1964855

Methods for exploring early events in protein folding

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1964855

Autonomous folding of a peptide corresponding to the N-terminal beta-hairpin from ubiquitin

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1964855

Observation of strange kinetics in protein folding

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1964855

Searching for "downhill scenarios" in protein folding

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1964855

MOLMOL: a program for display and analysis of macromolecular structures

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1964855

Heteronuclear three-dimensional NMR spectroscopy of a partially denatured protein: the A-state of human ubiquitin.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1964855

Dissecting the structure of a partially folded protein. Circular dichroism and nuclear magnetic resonance studies of peptides from ubiquitin

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1964855

Molecular dynamics simulations of protein unfolding and limited refolding: characterization of partially unfolded states of ubiquitin in 60% methanol and in water

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1964855

Structure of ubiquitin refined at 1.8 A resolution

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1964855

Early hydrogen-bonding events in the folding reaction of ubiquitin

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1964855

Protein Folding: A Perspective from Theory and Experiment.

21 June 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0700959104

Structure of the Amide I Band of Peptides Measured by Femtosecond Nonlinear-Infrared Spectroscopy

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0700959104

Simulation studies of amide I IR absorption and two-dimensional IR spectra of beta hairpins in liquid water.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0700959104

Nonadiabatic effects in the two-dimensional infrared spectra of peptides: application to alanine dipeptide.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0700959104

Multiple probes reveal a native-like intermediate during low-temperature refolding of ubiquitin

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0700959104

Ubiquitin folds through a highly polarized transition state.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0700959104

Molecular dynamics simulations of hydrophobic collapse of ubiquitin

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0700959104

Residual Native Structure in a Thermally Denatured β-Hairpin

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0700959104

Cooperative Assembly of a Nativelike Ubiquitin Structure through Peptide Fragment Complexation: Energetics of Peptide Association and Folding†

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0700959104

Watching hydrogen-bond dynamics in a β-turn by transient two-dimensional infrared spectroscopy

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0700959104

Folding at the speed limit

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0700959104

Signatures of beta-sheet secondary structures in linear and two-dimensional infrared spectroscopy

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17551015

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Visualization and characterization of the infrared active amide I vibrations of proteins

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17551015

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Fast events in protein folding: the time evolution of primary processes

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17551015

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1073/PNAS.0700959104

1 reference

25 July 2017

0 references

1 reference

25 July 2017

1 reference