(Q33287055)

25 July 2017

title

160-fold acceleration of the Smith-Waterman algorithm using a field programmable gate array (FPGA). (English)

1 reference

25 July 2017

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Kevin Truong

3

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author name string

Isaac T S Li

series ordinal

1

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25 July 2017

Warren Shum

series ordinal

2

1 reference

25 July 2017

language of work or name

1 reference

7 June 2007

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25 July 2017

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25 July 2017

volume

8

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25 July 2017

page(s)

185

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Striped Smith-Waterman speeds database searches six times over other SIMD implementations

25 July 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1896180

A systematic approach to dynamic programming in bioinformatics

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1896180

Identification of common molecular subsequences

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1896180

Rapid and sensitive protein similarity searches

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1896180

Basic local alignment search tool

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1896180

Six-fold speed-up of Smith-Waterman sequence database searches using parallel processing on common microprocessors

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1896180

GeneTree: comparing gene and species phylogenies using reconciled trees

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1896180

Parallel hardware for sequence comparison and alignment.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1896180

31 October 2018

Identifiers

DOI

10.1186/1471-2105-8-185

1 reference

25 July 2017

DBLP publication ID

journals/bmcbi/LiST07

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DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

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25 July 2017

1 reference