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CORRIE: enzyme sequence annotation with confidence estimates.
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scholarly article
1 reference
stated in
Europe PubMed Central
PMCID
1892082
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17570146%20AND%20SRC:MED&resulttype=core&format=json
retrieved
31 December 2019
title
CORRIE: enzyme sequence annotation with confidence estimates
(English)
1 reference
stated in
Europe PubMed Central
PMCID
1892082
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17570146%20AND%20SRC:MED&resulttype=core&format=json
retrieved
31 December 2019
author
Benjamin Audit
series ordinal
1
1 reference
stated in
Europe PubMed Central
PMCID
1892082
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17570146%20AND%20SRC:MED&resulttype=core&format=json
retrieved
31 December 2019
Emmanuel D Levy
series ordinal
2
object named as
Emmanuel D Levy
1 reference
stated in
Europe PubMed Central
PMCID
1892082
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17570146%20AND%20SRC:MED&resulttype=core&format=json
retrieved
31 December 2019
Christos Ouzounis
series ordinal
5
object named as
Christos A Ouzounis
1 reference
stated in
Europe PubMed Central
PMCID
1892082
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17570146%20AND%20SRC:MED&resulttype=core&format=json
retrieved
31 December 2019
Leon Goldovsky
series ordinal
4
object named as
Leon Goldovsky
1 reference
stated in
Europe PubMed Central
PMCID
1892082
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17570146%20AND%20SRC:MED&resulttype=core&format=json
retrieved
31 December 2019
author name string
Wally R Gilks
series ordinal
3
1 reference
stated in
Europe PubMed Central
PMCID
1892082
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17570146%20AND%20SRC:MED&resulttype=core&format=json
retrieved
31 December 2019
publication date
22 May 2007
1 reference
stated in
Europe PubMed Central
PMCID
1892082
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17570146%20AND%20SRC:MED&resulttype=core&format=json
retrieved
31 December 2019
published in
BMC Bioinformatics
1 reference
stated in
Europe PubMed Central
PMCID
1892082
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17570146%20AND%20SRC:MED&resulttype=core&format=json
retrieved
31 December 2019
volume
8 Suppl 4
1 reference
stated in
Europe PubMed Central
PMCID
1892082
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17570146%20AND%20SRC:MED&resulttype=core&format=json
retrieved
31 December 2019
page(s)
S3
1 reference
stated in
Europe PubMed Central
PMCID
1892082
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17570146%20AND%20SRC:MED&resulttype=core&format=json
retrieved
31 December 2019
copyright license
Creative Commons Attribution 2.0 Generic
start time
1 May 2007
1 reference
stated in
April 2022 Public Data File from Crossref
copyright status
copyrighted
0 references
exact match
https://scigraph.springernature.com/pub.10.1186/1471-2105-8-s4-s3
0 references
cites work
The Universal Protein Resource (UniProt): an expanding universe of protein information
1 reference
stated in
PubMed Central
reference URL
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21 June 2018
Probabilistic annotation of protein sequences based on functional classifications.
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PubMed Central
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21 June 2018
Structural basis for the exocellulase activity of the cellobiohydrolase CbhA from Clostridium thermocellum
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1892082
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21 June 2018
The past, present and future of genome-wide re-annotation
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1892082
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21 June 2018
Intrinsic errors in genome annotation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1892082
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21 June 2018
Can sequence determine function?
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1892082
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21 June 2018
The ENZYME database in 2000
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1892082
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21 June 2018
Cellulose, cellulases and cellulosomes
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1892082
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21 June 2018
Predicting functions from protein sequences--where are the bottlenecks?
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1892082
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21 June 2018
Bioinformatics: from genome data to biological knowledge.
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1892082
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21 June 2018
An evolutionary trace method defines binding surfaces common to protein families
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1892082
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21 June 2018
Changing the ion binding specificity of the Escherichia coli H(+)-transporting ATP synthase by directed mutagenesis of subunit c.
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21 June 2018
A method to predict functional residues in proteins
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1892082
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21 June 2018
Basic local alignment search tool
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21 June 2018
Puzzling subunits of mitochondrial cytochrome reductase
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1892082
retrieved
21 June 2018
Directed evolution of DNA polymerase, RNA polymerase and reverse transcriptase activity in a single polypeptide.
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PubMed Central
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31 October 2018
Statistically rigorous automated protein annotation.
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1892082
retrieved
31 October 2018
Automatic annotation of protein function based on family identification
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1892082
retrieved
31 October 2018
Adaptive algorithm of automated annotation.
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1892082
retrieved
31 October 2018
CAST: an iterative algorithm for the complexity analysis of sequence tracts. Complexity analysis of sequence tracts.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1892082
retrieved
31 October 2018
Assessing annotation transfer for genomics: quantifying the relations between protein sequence, structure and function through traditional and probabilistic scores.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1892082
retrieved
31 October 2018
Whole-genome sequence annotation: 'Going wrong with confidence'.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1892082
retrieved
31 October 2018
Prediction of enzyme classification from protein sequence without the use of sequence similarity.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1892082
retrieved
31 October 2018
Modeling the percolation of annotation errors in a database of protein sequences
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/17570146
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
What we do not know about sequence analysis and sequence databases
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/17570146
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Identifiers
DOI
10.1186/1471-2105-8-S4-S3
1 reference
stated in
Europe PubMed Central
PMCID
1892082
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17570146%20AND%20SRC:MED&resulttype=core&format=json
retrieved
31 December 2019
DBLP publication ID
journals/bmcbi/AuditLGGO07
1 reference
stated in
DBLP Dataset 2021-01-02
retrieved
28 January 2021
Dimensions Publication ID
1048106795
0 references
PMCID
1892082
1 reference
stated in
Europe PubMed Central
PMCID
1892082
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17570146%20AND%20SRC:MED&resulttype=core&format=json
retrieved
31 December 2019
PubMed ID
17570146
1 reference
stated in
Europe PubMed Central
PMCID
1892082
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17570146%20AND%20SRC:MED&resulttype=core&format=json
retrieved
31 December 2019
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