(Q33295088)

25 July 2017

1 reference

title

Evaluation of molecular methods used for establishing the interactions and functions of microorganisms in anaerobic bioreactors (English)

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25 July 2017

1 reference

Talbot G

1

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25 July 2017

Topp E

series ordinal

2

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25 July 2017

Palin MF

series ordinal

3

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25 July 2017

Massé DI

series ordinal

4

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25 July 2017

language of work or name

English

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publication date

6 August 2007

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25 July 2017

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25 July 2017

volume

42

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25 July 2017

issue

3

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25 July 2017

page(s)

513-537

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Basic local alignment search tool

25 July 2017

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Bacterial and archaeal 16S rDNA and 16S rRNA dynamics during an acetate crisis in an anaerobic digestor ecosystem

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7 January 2021

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Diversity and origin of Desulfovibrio species: phylogenetic definition of a family

7 January 2021

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Polymerase chain reaction denaturing gradient gel electrophoresis analysis of the N2-fixing bacterial diversity in soil under Acacia tortilis ssp. raddiana and Balanites aegyptiaca in the dryland part of Senegal.

7 January 2021

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Molecular approaches to the assessment of biodiversity in aquatic microbial communities.

7 January 2021

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Stable isotope probing - linking microbial identity to function

7 January 2021

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Genomics and evolution. Shotgun sequencing in the sea: a blast from the past?

7 January 2021

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Methyl-coenzyme M reductase genes: unique functional markers for methanogenic and anaerobic methane-oxidizing Archaea

7 January 2021

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Stable-isotope probing of DNA: insights into the function of uncultivated microorganisms from isotopically labeled metagenomes

7 January 2021

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Statistical analysis of denaturing gel electrophoresis (DGE) fingerprinting patterns

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.WATRES.2007.08.003

Effect of moisture content on anaerobic digestion of dewatered sludge: ammonia inhibition to carbohydrate removal and methane production.

7 January 2021

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Taxonomic, phylogenetic, and ecological diversity of methanogenic Archaea.

7 January 2021

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Use of the 16S–23S ribosomal genes spacer region in studies of prokaryotic diversity

7 January 2021

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Phylogenetic group-specific oligodeoxynucleotide probes for identification of single microbial cells

7 January 2021

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7 January 2021

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7 January 2021

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Methanogenic population dynamics during start-up of anaerobic digesters treating municipal solid waste and biosolids

7 January 2021

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Rapid method for coextraction of DNA and RNA from natural environments for analysis of ribosomal DNA- and rRNA-based microbial community composition

7 January 2021

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Community structure analyses are more sensitive to differences in soil bacterial communities than anonymous diversity indices

7 January 2021

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Semi-automated genetic analyses of soil microbial communities: comparison of T-RFLP and RISA based on descriptive and discriminative statistical approaches

7 January 2021

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Identification and cultivation of anaerobic, syntrophic long-chain fatty acid-degrading microbes from mesophilic and thermophilic methanogenic sludges.

7 January 2021

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Diversity of anaerobic microorganisms involved in long-chain fatty acid degradation in methanogenic sludges as revealed by RNA-based stable isotope probing

7 January 2021

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Richness and diversity of bacterioplankton species along an estuarine gradient in Moreton Bay, Australia

7 January 2021

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Improved strategy for comparing microbial assemblage fingerprints

7 January 2021

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Using ecological diversity measures with bacterial communities.

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.WATRES.2007.08.003

Dynamic transition of a methanogenic population in response to the concentration of volatile fatty acids in a thermophilic anaerobic digester.

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.WATRES.2007.08.003

Direct comparison of single-strand conformation polymorphism (SSCP) and denaturing gradient gel electrophoresis (DGGE) to characterize a microbial community on the basis of 16S rRNA gene fragments.

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.WATRES.2007.08.003

Investigation of candidate division TM7, a recently recognized major lineage of the domain Bacteria with no known pure-culture representatives

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.WATRES.2007.08.003

Recurring seasonal dynamics of microbial communities in stream habitats

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.WATRES.2007.08.003

The Nonconcept of Species Diversity: A Critique and Alternative Parameters.

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.WATRES.2007.08.003

Extraction of intact ribosomal RNA from anaerobic bioreactor samples for molecular ecological studies.

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.WATRES.2007.08.003

Cultivation and in situ detection of a thermophilic bacterium capable of oxidizing propionate in syntrophic association with hydrogenotrophic methanogens in a thermophilic methanogenic granular sludge

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.WATRES.2007.08.003

Syntrophus aciditrophicus sp. nov., a new anaerobic bacterium that degrades fatty acids and benzoate in syntrophic association with hydrogen-using microorganisms

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.WATRES.2007.08.003

Combining culture-dependent and -independent methodologies for estimation of richness of estuarine bacterioplankton consuming riverine dissolved organic matter.

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.WATRES.2007.08.003

Microautoradiographic study of Rhodocyclus-related polyphosphate-accumulating bacteria in full-scale enhanced biological phosphorus removal plants

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.WATRES.2007.08.003

Activity, structure and dynamics of the methanogenic archaeal community in a flooded Italian rice field

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.WATRES.2007.08.003

Recovery and analysis of formyltetrahydrofolate synthetase gene sequences from natural populations of acetogenic bacteria

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.WATRES.2007.08.003

Diversity of the archaeal community in 44 anaerobic digesters as determined by single strand conformation polymorphism analysis and 16S rDNA sequencing.

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.WATRES.2007.08.003

Microbial community dynamics during start-up of acidogenic anaerobic reactors

7 January 2021

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Syntrophomonas wolfei subsp. saponavida subsp. nov., a Long-Chain Fatty-Acid-Degrading, Anaerobic, Syntrophic Bacterium; Syntrophomonas wolfei subsp. wolfei subsp. nov.; and Emended Descriptions of the Genus and Species

7 January 2021

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7 January 2021

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7 January 2021

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Effects of amendment with ferrihydrite and gypsum on the structure and activity of methanogenic populations in rice field soil

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.WATRES.2007.08.003

Evaluation of PCR amplification bias by terminal restriction fragment length polymorphism analysis of small-subunit rRNA and mcrA genes by using defined template mixtures of methanogenic pure cultures and soil DNA extracts

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.WATRES.2007.08.003

Stable-isotope probing of microorganisms thriving at thermodynamic limits: syntrophic propionate oxidation in flooded soil

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.WATRES.2007.08.003

Differential expression of methanogenesis genes of Methanothermobacter thermoautotrophicus (formerly Methanobacterium thermoautotrophicum) in pure culture and in cocultures with fatty acid-oxidizing syntrophs

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.WATRES.2007.08.003

The use of stable isotope probing techniques in bioreactor and field studies on bioremediation

7 January 2021

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The integrated microbial genomes (IMG) system

7 January 2021

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Use of simulated data sets to evaluate the fidelity of metagenomic processing methods

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.WATRES.2007.08.003

Long-term, high-rate anaerobic biological treatment of whey wastewaters at psychrophilic temperatures.

7 January 2021

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The genome of Syntrophus aciditrophicus: life at the thermodynamic limit of microbial growth

7 January 2021

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Microbial population dynamics during start-up and overload conditions of anaerobic digesters treating municipal solid waste and sewage sludge

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.WATRES.2007.08.003

A comparison of DNA profiling techniques for monitoring nutrient impact on microbial community composition during bioremediation of petroleum-contaminated soils.

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.WATRES.2007.08.003

An assessment of the hypervariable domains of the 16S rRNA genes for their value in determining microbial community diversity: the paradox of traditional ecological indices

7 January 2021

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Bacterial community structures in MBRs treating municipal wastewater: relationship between community stability and reactor performance

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.WATRES.2007.08.003

Analyses of microbial activity in biomass-recycle reactors using denaturing gradient gel electrophoresis of 16S rDNA and 16S rRNA PCR products

7 January 2021

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DGGE/TGGE a method for identifying genes from natural ecosystems.

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.WATRES.2007.08.003

Application of denaturing gradient gel electrophoresis (DGGE) and temperature gradient gel electrophoresis (TGGE) in microbial ecology.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.WATRES.2007.08.003

Evidence for existence of "mesotogas," members of the order Thermotogales adapted to low-temperature environments

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.WATRES.2007.08.003

Genotypic microbial community profiling: a critical technical review

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.WATRES.2007.08.003

Polyphasic approaches to the identification of predominant polyphosphate-accumulating organisms in a laboratory-scale anaerobic/aerobic activated sludge system

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.WATRES.2007.08.003

Detection of polymorphisms of human DNA by gel electrophoresis as single-strand conformation polymorphisms

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.WATRES.2007.08.003

New threshold and confidence estimates for terminal restriction fragment length polymorphism analysis of complex bacterial communities

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.WATRES.2007.08.003

Interpreting the unculturable majority

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.WATRES.2007.08.003

Methanogenic population dynamics and performance of an anaerobic membrane bioreactor (AnMBR) treating swine manure under high shear conditions.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.WATRES.2007.08.003

Integrated electronic detection of biomolecules

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.WATRES.2007.08.003

Molecular monitoring of microbial diversity in expanded granular sludge bed (EGSB) reactors treating oleic acid

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.WATRES.2007.08.003

Stable-isotope probing as a tool in microbial ecology

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.WATRES.2007.08.003

Characterization of bacterial and fungal soil communities by automated ribosomal intergenic spacer analysis fingerprints: biological and methodological variability

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.WATRES.2007.08.003

Characterization of microbial communities in anaerobic bioreactors using molecular probes

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.WATRES.2007.08.003

Relationship between bacterioplankton richness, respiration, and production in the Southern North Sea.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.WATRES.2007.08.003

Use of length heterogeneity PCR and fatty acid methyl ester profiles to characterize microbial communities in soil

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.WATRES.2007.08.003

Community analysis of a full-scale anaerobic bioreactor treating paper mill wastewater

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.WATRES.2007.08.003

Use of 16S rRNA gene terminal restriction fragment analysis to assess the impact of solids retention time on the bacterial diversity of activated sludge

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.WATRES.2007.08.003

Effect of ammonium addition on methanogenic community in a fluidized bed anaerobic digestion

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.WATRES.2007.08.003

Phylogenetic description of immobilized methanogenic community using real-time PCR in a fixed-bed anaerobic digester

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.WATRES.2007.08.003

16S-23S rDNA intergenic spacer and 23S rDNA of anaerobic ammonium-oxidizing bacteria: implications for phylogeny and in situ detection

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.WATRES.2007.08.003

Assessment of anaerobic wastewater treatment failure using terminal restriction fragment length polymorphism analysis

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.WATRES.2007.08.003

Phylogenetic diversity of mesophilic and thermophilic granular sludges determined by 16S rRNA gene analysis.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.WATRES.2007.08.003

Effect of dilution rate on structure of a mesophilic acetate-degrading methanogenic community during continuous cultivation.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.WATRES.2007.08.003

Effect of dilution rate on metabolic pathway shift between aceticlastic and nonaceticlastic methanogenesis in chemostat cultivation

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.WATRES.2007.08.003

Microbial diversity of mesophilic methanogenic consortium that can degrade long-chain fatty acids in chemostat cultivation

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.WATRES.2007.08.003

Stable-isotope probing of bacteria capable of degrading salicylate, naphthalene, or phenanthrene in a bioreactor treating contaminated soil

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.WATRES.2007.08.003

Syntrophomonas zehnderi sp. nov., an anaerobe that degrades long-chain fatty acids in co-culture with Methanobacterium formicicum.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.WATRES.2007.08.003

Molecular assessment of complex microbial communities degrading long chain fatty acids in methanogenic bioreactors.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.WATRES.2007.08.003

Microbial communities involved in anaerobic degradation of unsaturated or saturated long-chain fatty acids

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.WATRES.2007.08.003

Taxonomic Note: A Place for DNA-DNA Reassociation and 16S rRNA Sequence Analysis in the Present Species Definition in Bacteriology

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.WATRES.2007.08.003

Quantitative analysis of small-subunit rRNA genes in mixed microbial populations via 5'-nuclease assays

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.WATRES.2007.08.003

Microbial community analysis of mesophilic anaerobic protein degradation process using bovine serum albumin (BSA)-fed continuous cultivation

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.WATRES.2007.08.003

Canonical community ordination. Part I: Basic theory and linear methods

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.WATRES.2007.08.003

Opening the black box of soil microbial diversity

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.WATRES.2007.08.003

Microbial diversity in a thermophilic aerobic biofilm process: analysis by length heterogeneity PCR (LH-PCR).

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.WATRES.2007.08.003

Combined molecular ecological and confocal laser scanning microscopic analysis of peat bog methanogen populations

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.WATRES.2007.08.003

Linking microbial community structure with function: fluorescence in situ hybridization-microautoradiography and isotope arrays

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.WATRES.2007.08.003

Phylogenetic diversity of methanogenic archaea in swine waste storage pits

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.WATRES.2007.08.003

Modern scientific methods and their potential in wastewater science and technology

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.WATRES.2007.08.003

Metaproteomics: studying functional gene expression in microbial ecosystems

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.WATRES.2007.08.003

Phylogenetic structure of the prokaryotic domain: The primary kingdoms

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.WATRES.2007.08.003

Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and Eucarya

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.WATRES.2007.08.003

Functional patterns and temperature response of cellulose-fermenting microbial cultures containing different methanogenic communities

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.WATRES.2007.08.003

Evaluation of microfluidic biosensor development using microscopic analysis of molecular beacon hybridization kinetics.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.WATRES.2007.08.003

Group-specific primer and probe sets to detect methanogenic communities using quantitative real-time polymerase chain reaction.

7 January 2021

1 reference

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Comparisons of different hypervariable regions of rrs genes for use in fingerprinting of microbial communities by PCR-denaturing gradient gel electrophoresis.

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Applications of real-time polymerase chain reaction for quantification of microorganisms in environmental samples

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Estimation of diversity and community structure through restriction fragment length polymorphism distribution analysis of bacterial 16S rRNA genes from a microbial mat at an active, hydrothermal vent system, Loihi Seamount, Hawaii

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Automated approach for ribosomal intergenic spacer analysis of microbial diversity and its application to freshwater bacterial communities.

7 January 2021

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Phylogenetic diversity of subsurface marine microbial communities from the Atlantic and Pacific Oceans

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Diversity and structure of the methanogenic community in anoxic rice paddy soil microcosms as examined by cultivation and direct 16S rRNA gene sequence retrieval.

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Quantification of syntrophic fatty acid-beta-oxidizing bacteria in a mesophilic biogas reactor by oligonucleotide probe hybridization.

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Characterization of microbial diversity by determining terminal restriction fragment length polymorphisms of genes encoding 16S rRNA.

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Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA

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Quantification of methanogenic groups in anaerobic biological reactors by oligonucleotide probe hybridization

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A new approach to utilize PCR-single-strand-conformation polymorphism for 16S rRNA gene-based microbial community analysis.

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Phylogeny of dissimilatory sulfite reductases supports an early origin of sulfate respiration

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Identifiers

DOI

1 reference

25 July 2017

1 reference