(Q33313881)

25 July 2017

A model for carbohydrate metabolism in the diatom Phaeodactylum tricornutum deduced from comparative whole genome analysis (English)

1 reference

Phaeodactylum tricornutum

25 July 2017

Phaeodactylum tricornutum

1 reference

Micaela Schnitzler Parker

inferred from title

whole genome sequencing

1 reference

Uma Maheswari

11

0 references

Micaela Schnitzler Parker

6

0 references

Ansgar Gruber

Ansgar Gruber

3

0 references

Thomas Mock

Thomas Mock

5

0 references

Aaron Kaplan

Aaron Kaplan

8

0 references

Chris Bowler

Chris Bowler

Véronique Martin-Jézéquel

13

0 references

Veronique Martin-Jezequel

4

0 references

E. Virginia Armbrust

12

E Virginia Armbrust

1 reference

25 July 2017

Peter G Kroth

1

0 references

author name string

Anthony Chiovitti

2

1 reference

25 July 2017

Michele S Stanley

7

1 reference

25 July 2017

Lise Caron

9

1 reference

25 July 2017

Till Weber

10

1 reference

25 July 2017

language of work or name

English

0 references

publication date

9 January 2008

1 reference

25 July 2017

1 reference

25 July 2017

3

1 reference

25 July 2017

e1426

1 reference

25 July 2017

1

1 reference

Creative Commons Attribution 4.0 International

25 July 2017

start time

9 January 2008

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

The Chlamydomonas genome reveals the evolution of key animal and plant functions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2173943

Locating proteins in the cell using TargetP, SignalP and related tools

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2173943

The plant-like C2 glycolate cycle and the bacterial-like glycerate pathway cooperate in phosphoglycolate metabolism in cyanobacteria

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2173943

Cell wall assembly in Saccharomyces cerevisiae

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2173943

The regulation of carbon and nutrient assimilation in diatoms is significantly different from green algae.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2173943

Glutathionylation of chloroplast thioredoxin f is a redox signaling mechanism in plants

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2173943

The C(4) pathway: an efficient CO(2) pump

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2173943

The environmental plasticity and ecological genomics of the cyanobacterial CO2 concentrating mechanism.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2173943

Redox regulation of carbon storage and partitioning in response to light and sugars.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2173943

CO2 concentrating mechanisms in algae: mechanisms, environmental modulation, and evolution

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2173943

Strategies to maintain redox homeostasis during photosynthesis under changing conditions

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2173943

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2173943

14 July 2018

The Diatom EST Database

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2173943

CDD: a Conserved Domain Database for protein classification

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2173943

EST-analysis of the thermo-acidophilic red microalga Galdieria sulphuraria reveals potential for lipid A biosynthesis and unveils the pathway of carbon export from rhodoplasts.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2173943

Gene replacement of fructose-1,6-bisphosphate aldolase supports the hypothesis of a single photosynthetic ancestor of chromalveolates

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2173943

The Genome of the Diatom Thalassiosira Pseudonana: Ecology, Evolution, and Metabolism

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2173943

Single-cell C(4) photosynthesis versus the dual-cell (Kranz) paradigm

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2173943

Improved prediction of signal peptides: SignalP 3.0

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2173943

Identification of a new chloroplast carbonic anhydrase in Chlamydomonas reinhardtii

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2173943

Genome sequence of the ultrasmall unicellular red alga Cyanidioschyzon merolae 10D

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2173943

Using mutants to probe the in vivo function of plastid envelope membrane metabolite transporters

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2173943

ASCORBATE AND GLUTATHIONE: Keeping Active Oxygen Under Control

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2173943

Evaluation of light regulatory potential of Calvin cycle steps based on large-scale gene expression profiling data

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2173943

F ROM B ACTERIAL G LYCOGEN TO S TARCH : Understanding the Biogenesis of the Plant Starch Granule

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2173943

Nucleus-encoded, plastid-targeted glyceraldehyde-3-phosphate dehydrogenase (GAPDH) indicates a single origin for chromalveolate plastids

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2173943

Glycogen and its Metabolism

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2173943

Physiological and molecular biological characterization of intracellular carbonic anhydrase from the marine diatom Phaeodactylum tricornutum

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2173943

Photorespiration: metabolic pathways and their role in stress protection

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2173943

Predicting subcellular localization of proteins based on their N-terminal amino acid sequence

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2173943

Cellulose microfibrils in plants: biosynthesis, deposition, and integration into the cell wall

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2173943

Localization of synthesis of beta1,6-glucan in Saccharomyces cerevisiae

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2173943

Mechanism of light regulation of Rubisco: a specific role for the larger Rubisco activase isoform involving reductive activation by thioredoxin-f

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2173943

ChloroP, a neural network-based method for predicting chloroplast transit peptides and their cleavage sites

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2173943

Regulation of chloroplast enzyme activities by thioredoxins: activation or relief from inhibition?

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2173943

A neural network method for identification of prokaryotic and eukaryotic signal peptides and prediction of their cleavage sites.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2173943

Evolutionary conserved light regulation of Calvin cycle activity by NADPH-mediated reversible phosphoribulokinase/CP12/ glyceraldehyde-3-phosphate dehydrogenase complex dissociation

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2173943

Biogeochemical Controls and Feedbacks on Ocean Primary Production

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2173943

Evolution and regulatory role of the hexokinases

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2173943

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2173943

Organization and transcription of the myo-inositol operon, iol, of Bacillus subtilis

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2173943

Transmembrane domain-dependent sorting of proteins to the ER and plasma membrane in yeast

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2173943

Molecular characterization and resistance to hydrogen peroxide of two fructose-1,6-bisphosphatases from Synechococcus PCC 7942.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2173943

Cloning and analysis of the C4 photosynthetic NAD-dependent malic enzyme of amaranth mitochondria.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2173943

Glucokinase: structural analysis of a protein involved in susceptibility to diabetes

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2173943

Photosynthesis in phosphoenolpyruvate carboxykinase-type C4 plants: pathways of C4 acid decarboxylation in bundle sheath cells of Urochloa panicoides

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2173943

The identification of myo-inositol:NAD(P)+ oxidoreductase in mammalian brain

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2173943

Photorespiration in diatoms. IV. Two pathways of glycolate metabolism in synchronized cultures of Cylindrotheca fusiformis

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2173943

Diatom plastids possess a phosphoribulokinase with an altered regulation and no oxidative pentose phosphate pathway.

14 July 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0001426

A new molecular tool for transgenic diatoms: control of mRNA and protein biosynthesis by an inducible promoter-terminator cassette.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0001426

Identification and characterization of a new conserved motif within the presequence of proteins targeted into complex diatom plastids

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0001426

Protein targeting into complex diatom plastids: functional characterisation of a specific targeting motif.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0001426

Confirmation of iron limitation of phytoplankton photosynthesis in the equatorial Pacific Ocean

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0001426

Unicellular C4 photosynthesis in a marine diatom.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0001426

The role of the C4 pathway in carbon accumulation and fixation in a marine diatom

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0001426

Hypothesis: The Ecological Advantage of Chloroplast ER - The Ability to Outcompete at Low Dissolved CO(2) Concentrations.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0001426

Diversity of the cadmium-containing carbonic anhydrase in marine diatoms and natural waters.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0001426

Localization of soluble beta-carbonic anhydrase in the marine diatom Phaeodactylum tricornutum. Sorting to the chloroplast and cluster formation on the girdle lamellae.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0001426

Regulation of the expression of intracellular beta-carbonic anhydrase in response to CO2 and light in the marine diatom Phaeodactylum tricornutum.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0001426

CO2 sensing at ocean surface mediated by cAMP in a marine diatom.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0001426

Sex ratio unaffected by parental age gap.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0001426

Glycolate Excretion and the Oxygen to Carbon Dioxide Net Exchange Ratio during Photosynthesis in Chlamydomonas reinhardtii

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0001426

Tansley Review No. 94. Thioredoxins: structure and function in plant cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0001426

Chloroplast genomes of the diatoms Phaeodactylum tricornutum and Thalassiosira pseudonana: comparison with other plastid genomes of the red lineage.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0001426

The peculiar distribution of class I and class II aldolases in diatoms and in red algae.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0001426

Compartment-specific isoforms of TPI and GAPDH are imported into diatom mitochondria as a fusion protein: evidence in favor of a mitochondrial origin of the eukaryotic glycolytic pathway.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0001426

Thermodynamic analysis of the emergence of new regulatory properties in a phosphoribulokinase-glyceraldehyde 3-phosphate dehydrogenase complex

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0001426

Evolution of the glucose-6-phosphate isomerase: the plasticity of primary metabolism in photosynthetic eukaryotes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0001426

Spinach hexokinase I is located in the outer envelope membrane of plastids.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0001426

Prediction of signal peptides and signal anchors by a hidden Markov model.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2173943

INDUCTION OF PHOTORESPIRATION BY LIGHT IN THE CENTRIC DIATOMTHALASSIOSIRA WEISSFLOGII(BACILLARIOPHYCEAE): MOLECULAR CHARACTERIZATION AND PHYSIOLOGICAL CONSEQUENCES

31 October 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0001426

SYNERGISTIC EFFECTS OF LIGHT, TEMPERATURE, AND NITROGEN SOURCE ON TRANSCRIPTION OF GENES FOR CARBON AND NITROGEN METABOLISM IN THE CENTRIC DIATOM THALASSIOSIRA PSEUDONANA (BACILLARIOPHYCEAE)1

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0001426

A Neural Network Method for Identification of Prokaryotic and Eukaryotic Signal Peptides and Prediction of their Cleavage Sites

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0001426

A switch from Si(OH)4to NO3−depletion in the glacial Southern Ocean

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0001426

PHOTORESPIRATION IN CONTINUOUS CULTURE OF DUNALIELLA TERTIOLECTA (CHLOROPHYTA): RELATIONSHIPS BETWEEN SERINE, GLYCINE, AND EXTRACELLULAR GLYCOLATE

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0001426

Diel variability of glycolate in the eastern tropical Atlantic Ocean

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0001426

Carbon dioxide limitation of marine phytoplankton growth rates

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0001426

Photorespiration protects C3 plants from photooxidation

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0001426

Inorganic carbon acquisition systems in cyanobacteria

21 January 2018

1 reference

12 December 2020

The role of photorespiration in redox and energy balance of photosynthetic plant cells: A study with a barley mutant deficient in glycine decarboxylase

1 reference

12 December 2020

Purification and Characterization of Phosphoglycolate Phosphatase from the Cyanobacterium Coccochloris peniocystis

1 reference

12 December 2020

C3 and C4 pathways of photosynthetic carbon assimilation in marine diatoms are under genetic, not environmental, control

1 reference

12 December 2020

CO2 CONCENTRATING MECHANISMS IN PHOTOSYNTHETIC MICROORGANISMS

1 reference

12 December 2020

[Polysaccharides of diatoms occurring in Lake Baikal]

1 reference

12 December 2020

Electron transport to oxygen mitigates against the photoinactivation of Photosystem II in vivo

1 reference

12 December 2020

Structural characterization of beta-D-(1-->3)-glucans from different growth phases of the marine diatoms Chaetoceros mülleri and Thalassiosira weissflogii

1 reference

12 December 2020

Photosynthetic redox control of nuclear gene expression

1 reference

12 December 2020

Reduction to below threshold levels of glycolate oxidase activities in transgenic tobacco enhances photoinhibition during irradiation

1 reference

12 December 2020

Molecular directionality of beta-chitin biosynthesis

1 reference

12 December 2020

THE C2 OXIDATIVE PHOTOSYNTHETIC CARBON CYCLE

1 reference

12 December 2020

A branched beta-D-(1-->3,1-->6)-glucan from the marine diatom Chaetoceros debilis (Bacillariophyceae) characterized by NMR

1 reference

12 December 2020

10.1371/JOURNAL.PONE.0001426

Identifiers

DOI

1 reference

25 July 2017

0 references

1 reference

25 July 2017

1 reference