(Q33316813)

25 July 2017

Genomic sequence is highly predictive of local nucleosome depletion (English)

1 reference

25 July 2017

Guo-Cheng Yuan

1

1 reference

PubMed ID

18225943

25 July 2017

Jun S Liu

series ordinal

2

1 reference

25 July 2017

13 December 2007

1 reference

PLOS Computational Biology

25 July 2017

1 reference

25 July 2017

4

1 reference

25 July 2017

e13

1 reference

25 July 2017

1

1 reference

Creative Commons Attribution 4.0 International

25 July 2017

start time

25 January 2008

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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High-resolution profiling of histone methylations in the human genome

21 June 2018

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Rules and regulation in the primary structure of chromatin

21 June 2018

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Translational and rotational settings of H2A.Z nucleosomes across the Saccharomyces cerevisiae genome.

21 June 2018

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Analysis of the vertebrate insulator protein CTCF-binding sites in the human genome

21 June 2018

1 reference

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Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome

21 June 2018

1 reference

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Flexibility and constraint in the nucleosome core landscape of Caenorhabditis elegans chromatin

21 June 2018

1 reference

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Computational biology: toward deciphering gene regulatory information in mammalian genomes

21 June 2018

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A genomic code for nucleosome positioning

21 June 2018

1 reference

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Stubb: a program for discovery and analysis of cis-regulatory modules

21 June 2018

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Histone variant H2A.Z marks the 5' ends of both active and inactive genes in euchromatin

21 June 2018

1 reference

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Genome-wide map of nucleosome acetylation and methylation in yeast

21 June 2018

1 reference

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Genome-scale identification of nucleosome positions in S. cerevisiae

21 June 2018

1 reference

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Global nucleosome occupancy in yeast

21 June 2018

1 reference

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Transcriptional regulatory code of a eukaryotic genome

21 June 2018

1 reference

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21 June 2018

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Genome-wide prediction of Polycomb/Trithorax response elements in Drosophila melanogaster

21 June 2018

1 reference

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Integrating regulatory motif discovery and genome-wide expression analysis

21 June 2018

1 reference

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Computational detection of genomic cis-regulatory modules applied to body patterning in the early Drosophila embryo

21 June 2018

1 reference

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An algorithm for finding protein-DNA binding sites with applications to chromatin-immunoprecipitation microarray experiments

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2211532

Role of DNA sequence in nucleosome stability and dynamics

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2211532

Poly(dA-dT) promoter elements increase the equilibrium accessibility of nucleosomal DNA target sites

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2211532

Twenty-five years of the nucleosome, fundamental particle of the eukaryote chromosome

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2211532

Dissecting the regulatory circuitry of a eukaryotic genome

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2211532

Alteration of nucleosome structure as a mechanism of transcriptional regulation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2211532

Approximate Statistical Tests for Comparing Supervised Classification Learning Algorithms.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2211532

Crystal structure of the nucleosome core particle at 2.8 A resolution

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2211532

Nucleosome packaging and nucleosome positioning of genomic DNA

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2211532

Nucleosome DNA sequence pattern revealed by multiple alignment of experimentally mapped sequences

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2211532

Poly(dA:dT), a ubiquitous promoter element that stimulates transcription via its intrinsic DNA structure.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2211532

Nucleotide sequence-directed mapping of the nucleosomes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2211532

Sequence periodicities in chicken nucleosome core DNA.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2211532

Removal of positioned nucleosomes from the yeast PHO5 promoter upon PHO5 induction releases additional upstream activating DNA elements.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2211532

Statistical distributions of nucleosomes: nonrandom locations by a stochastic mechanism

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2211532

High-throughput mapping of the chromatin structure of human promoters.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2211532

Genome-scale profiling of histone H3.3 replacement patterns.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2211532

Evidence for nucleosome depletion at active regulatory regions genome-wide

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2211532

Identification and distinct regulation of yeast TATA box-containing genes.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2211532

Dynamics of Replication-Independent Histone Turnover in Budding Yeast

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2211532

Nucleosome positions predicted through comparative genomics

31 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18225943

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Prediction of microRNA targets

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18225943

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Intrinsic histone-DNA interactions and low nucleosome density are important for preferential accessibility of promoter regions in yeast

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18225943

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1371/JOURNAL.PCBI.0040013

1 reference

25 July 2017

journals/ploscb/YuanL08

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

25 July 2017

1 reference

PubMed ID

18225943