(Q33320550)

25 July 2017

title

Maintenance of long-range DNA interactions after inhibition of ongoing RNA polymerase II transcription (English)

1 reference

25 July 2017

Bart Eijkelkamp

5

0 references

Wouter de Laat

object named as

Wouter de Laat

6

0 references

author name string

Robert-Jan Palstra

1

1 reference

25 July 2017

Marieke Simonis

2

1 reference

25 July 2017

Petra Klous

3

1 reference

25 July 2017

Emilie Brasset

4

1 reference

25 July 2017

language of work or name

English

0 references

publication date

20 February 2008

1 reference

25 July 2017

1 reference

25 July 2017

volume

3

1 reference

25 July 2017

issue

2

1 reference

25 July 2017

page(s)

e1661

1 reference

Creative Commons Attribution 4.0 International

25 July 2017

copyright license

start time

20 February 2008

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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21 June 2018

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Quantitative analysis of chromosome conformation capture assays (3C-qPCR).

21 June 2018

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Intergenic transcription, cell-cycle and the developmentally regulated epigenetic profile of the human beta-globin locus

21 June 2018

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Myc dynamically and preferentially relocates to a transcription factory occupied by Igh

21 June 2018

1 reference

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Beta-globin active chromatin Hub formation in differentiating erythroid cells and in p45 NF-E2 knock-out mice

21 June 2018

1 reference

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Beyond the sequence: cellular organization of genome function

21 June 2018

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Dynamic genome architecture in the nuclear space: regulation of gene expression in three dimensions

21 June 2018

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FAIRE (Formaldehyde-Assisted Isolation of Regulatory Elements) isolates active regulatory elements from human chromatin

21 June 2018

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Transcription factories: structures conserved during differentiation and evolution

21 June 2018

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Nuclear organization of active and inactive chromatin domains uncovered by chromosome conformation capture-on-chip (4C).

21 June 2018

1 reference

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Cell cycle-specified fluctuation of nucleosome occupancy at gene promoters

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2243019

CTCF mediates long-range chromatin looping and local histone modification in the beta-globin locus

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2243019

Folding and organization of a contiguous chromosome region according to the gene distribution pattern in primary genomic sequence

21 June 2018

1 reference

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Flanking HS-62.5 and 3' HS1, and regions upstream of the LCR, are not required for beta-globin transcription

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2243019

Intermingling of chromosome territories in interphase suggests role in translocations and transcription-dependent associations

21 June 2018

1 reference

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Entropy-driven genome organization

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2243019

Splicing speckles are not reservoirs of RNA polymerase II, but contain an inactive form, phosphorylated on serine2 residues of the C-terminal domain

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2243019

Coregulated human globin genes are frequently in spatial proximity when active

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2243019

Replication and transcription: shaping the landscape of the genome

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2243019

The replication timing of CFTR and adjacent genes.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2243019

Remote control of gene transcription

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2243019

Proximity among distant regulatory elements at the beta-globin locus requires GATA-1 and FOG-1.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2243019

The active spatial organization of the beta-globin locus requires the transcription factor EKLF

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2243019

Transcription-dependent spatial arrangements of CFTR and adjacent genes in human cell nuclei

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2243019

Chromatin decondensation and nuclear reorganization of the HoxB locus upon induction of transcription

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2243019

Alpha-amanitin blocks translocation by human RNA polymerase II.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2243019

Nongenic transcription, gene regulation and action at a distance

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2243019

Looping and interaction between hypersensitive sites in the active beta-globin locus

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2243019

The transcription cycle of RNA polymerase II in living cells.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2243019

Gene density and transcription influence the localization of chromatin outside of chromosome territories detectable by FISH.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2243019

Long-range chromatin regulatory interactions in vivo

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2243019

Structural basis of transcription: alpha-amanitin-RNA polymerase II cocrystal at 2.8 A resolution

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2243019

The concept of self-organization in cellular architecture

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2243019

Nuclear localization and histone acetylation: a pathway for chromatin opening and transcriptional activation of the human beta-globin locus

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2243019

Large-scale chromatin organization of the major histocompatibility complex and other regions of human chromosome 6 and its response to interferon in interphase nuclei

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2243019

The organization of replication and transcription

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2243019

Mechanisms of developmental control of transcription in the murine alpha- and beta-globin loci

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2243019

Chromatin interaction mechanism of transcriptional control in vivo

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2243019

In vivo degradation of RNA polymerase II largest subunit triggered by alpha-amanitin

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2243019

A chromomeric model for nuclear and chromosome structure.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2243019

Transcription-dependent redistribution of the large subunit of RNA polymerase II to discrete nuclear domains

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2243019

5,6-Dichloro-1-beta-D-ribofuranosylbenzimidazole inhibits transcription elongation by RNA polymerase II in vitro.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2243019

The beta-globin nuclear compartment in development and erythroid differentiation

21 June 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0001661

Interaction between differentially methylated regions partitions the imprinted genes Igf2 and H19 into parent-specific chromatin loops

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0001661

Predicting three-dimensional genome structure from transcriptional activity.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0001661

Transcription complex stability and chromatin dynamics in vivo

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0001661

Fluorescence in situ hybridization analysis of transcript dynamics in cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0001661

What are the molecular ties that maintain genomic loops?

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18286208

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Long-range intrachromosomal interactions in the T helper type 2 cytokine locus

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18286208

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Requirement of an E1A-sensitive coactivator for long-range transactivation by the beta-globin locus control region

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18286208

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1371/JOURNAL.PONE.0001661

1 reference

25 July 2017

0 references

1 reference

25 July 2017

1 reference