(Q33337511)

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Predikin and PredikinDB: a computational framework for the prediction of protein kinase peptide specificity and an associated database of phosphorylation sites

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scholarly article

1 reference

Europe PubMed Central

25 July 2017

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Europe PubMed Central

Predikin and PredikinDB: a computational framework for the prediction of protein kinase peptide specificity and an associated database of phosphorylation sites (English)

1 reference

Europe PubMed Central

25 July 2017

0 references

phosphorylation

1 reference

based on heuristic

inferred from title

computational biology

1 reference

based on heuristic

inferred from title

5

object named as

Bostjan Kobe

0 references

object named as

Thomas Huber

3

0 references

Bruce Ernest Kemp

object named as

Bruce E Kemp

4

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author name string

Neil F W Saunders

1

1 reference

Europe PubMed Central

25 July 2017

Ross I Brinkworth

2

1 reference

Europe PubMed Central

25 July 2017

publication date

26 May 2008

1 reference

Europe PubMed Central

25 July 2017

BMC Bioinformatics

1 reference

Europe PubMed Central

25 July 2017

9

1 reference

Europe PubMed Central

25 July 2017

245

1 reference

Europe PubMed Central

25 July 2017

copyright license

Creative Commons Attribution 2.0 Generic

26 May 2008

1 reference

April 2022 Public Data File from Crossref

copyright status

1 reference

April 2022 Public Data File from Crossref

describes a project that uses

1 reference

Europe PubMed Central

26 June 2022

https://europepmc.org/article/PMC/PMC2412879

based on heuristic

inferred from PubMed Central ID database lookup

https://scigraph.springernature.com/pub.10.1186/1471-2105-9-245

0 references

Systematic Discovery of In Vivo Phosphorylation Networks

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2412879

21 June 2018

A cyclin-dependent kinase that promotes cytokinesis through modulating phosphorylation of the carboxy terminal domain of the RNA Pol II Rpb1p sub-unit

1 reference

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21 June 2018

pkaPS: prediction of protein kinase A phosphorylation sites with the simplified kinase-substrate binding model

1 reference

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21 June 2018

Uses for JNK: the many and varied substrates of the c-Jun N-terminal kinases

1 reference

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21 June 2018

Docking interactions in protein kinase and phosphatase networks

1 reference

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21 June 2018

BRSK2 is activated by cyclic AMP-dependent protein kinase A through phosphorylation at Thr260

1 reference

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ScanProsite: detection of PROSITE signature matches and ProRule-associated functional and structural residues in proteins

1 reference

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21 June 2018

Scoring of predicted GRK2 phosphorylation sites in Nedd4-2.

1 reference

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21 June 2018

A dimeric kinase assembly underlying autophosphorylation in the p21 activated kinases

1 reference

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21 June 2018

PPSP: prediction of PK-specific phosphorylation site with Bayesian decision theory

1 reference

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21 June 2018

Protein kinases associated with the yeast phosphoproteome

1 reference

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21 June 2018

SMART 5: domains in the context of genomes and networks

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2412879

21 June 2018

Pfam: clans, web tools and services

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2412879

21 June 2018

Induction of apoptosis by the Ste20-like kinase SLK, a germinal center kinase that activates apoptosis signal-regulating kinase and p38.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2412879

21 June 2018

Substrate specificity of protein kinases and computational prediction of substrates

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2412879

21 June 2018

Active Ca2+/calmodulin-dependent protein kinase II gamma B impairs positive selection of T cells by modulating TCR signaling

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2412879

21 June 2018

KinasePhos: a web tool for identifying protein kinase-specific phosphorylation sites

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2412879

21 June 2018

GPS: a comprehensive www server for phosphorylation sites prediction

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2412879

21 June 2018

Kinomics: methods for deciphering the kinome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2412879

21 June 2018

Protein kinase specificity. A strategic collaboration between kinase peptide specificity and substrate recruitment

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2412879

21 June 2018

The PANTHER database of protein families, subfamilies, functions and pathways

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2412879

21 June 2018

Calcium/calmodulin-dependent protein kinase II (CaMKII) localization acts in concert with substrate targeting to create spatial restriction for phosphorylation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2412879

21 June 2018

The kinase Grk2 regulates Nedd4/Nedd4-2-dependent control of epithelial Na+ channels

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2412879

21 June 2018

Phospho.ELM: a database of experimentally verified phosphorylation sites in eukaryotic proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2412879

21 June 2018

Structural modes of stabilization of permissive phosphorylation sites in protein kinases: distinct strategies in Ser/Thr and Tyr kinases

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2412879

21 June 2018

Phosphorylation of the mitochondrial protein Sab by stress-activated protein kinase 3

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2412879

21 June 2018

C-terminal repeat domain kinase I phosphorylates Ser2 and Ser5 of RNA polymerase II C-terminal domain repeats

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2412879

21 June 2018

Protein kinase inhibitors: insights into drug design from structure.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2412879

21 June 2018

The importance of intrinsic disorder for protein phosphorylation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2412879

21 June 2018

Characterization of cyclin L2, a novel cyclin with an arginine/serine-rich domain: phosphorylation by DYRK1A and colocalization with splicing factors

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2412879

21 June 2018

Protein disorder prediction: implications for structural proteomics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2412879

21 June 2018

Scansite 2.0: Proteome-wide prediction of cell signaling interactions using short sequence motifs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2412879

21 June 2018

Identification of residues which regulate activity of the STE20-related kinase hMINK.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2412879

21 June 2018

Structural basis and prediction of substrate specificity in protein serine/threonine kinases

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2412879

21 June 2018

The Bioperl toolkit: Perl modules for the life sciences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2412879

21 June 2018

Centrosomal anchoring of the protein kinase CK1delta mediated by attachment to the large, coiled-coil scaffolding protein CG-NAP/AKAP450

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2412879

21 June 2018

Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2412879

21 June 2018

Sequence and structure-based prediction of eukaryotic protein phosphorylation sites

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2412879

21 June 2018

How do protein kinases recognize their substrates?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2412879

21 June 2018

Amino acid substitution matrices from protein blocks

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2412879

21 June 2018

Abscisic acid-activated SNRK2 protein kinases function in the gene-regulation pathway of ABA signal transduction by phosphorylating ABA response element-binding factors

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2412879

31 October 2018

The active conformation of the PAK1 kinase domain

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2412879

31 October 2018

Biochemical characterization of the tobacco 42-kD protein kinase activated by osmotic stress

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2412879

31 October 2018

Prediction of phosphorylation sites using SVMs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2412879

31 October 2018

A kinase sequence database: sequence alignments and family assignment

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2412879

31 October 2018

Identifiers

10.1186/1471-2105-9-245

1 reference

Europe PubMed Central

25 July 2017

DBLP publication ID

journals/bmcbi/SaundersBHKK08

1 reference

DBLP Dataset 2021-01-02

28 January 2021

Dimensions Publication ID

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release_iw56xd3abnfb7dhjnkxahwlgfq

1 reference

https://api.fatcat.wiki/v0/release/iw56xd3abnfb7dhjnkxahwlgfq

24 November 2022

based on heuristic

mapped directly with Wikidata item

1 reference

Europe PubMed Central

25 July 2017

1 reference

Europe PubMed Central

25 July 2017

ResearchGate publication ID

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