(Q33343297)

26 July 2017

title

Genomic mid-range inhomogeneity correlates with an abundance of RNA secondary structures (English)

1 reference

26 July 2017

Jason M Bechtel

1

1 reference

26 July 2017

Thomas Wittenschlaeger

2

1 reference

26 July 2017

Trisha Dwyer

3

1 reference

26 July 2017

Jun Song

4

1 reference

26 July 2017

Sasi Arunachalam

5

1 reference

26 July 2017

Sadeesh K Ramakrishnan

6

1 reference

26 July 2017

Samuel Shepard

7

1 reference

26 July 2017

Alexei Fedorov

8

1 reference

26 July 2017

language of work or name

English

0 references

publication date

12 June 2008

1 reference

26 July 2017

1 reference

26 July 2017

volume

9

1 reference

26 July 2017

page(s)

284

1 reference

The neoselectionist theory of genome evolution

26 July 2017

cites work

1 reference

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Genome-wide transcription and the implications for genomic organization

21 June 2018

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CpGcluster: a distance-based algorithm for CpG-island detection

21 June 2018

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A machine learning strategy to identify candidate binding sites in human protein-coding sequence

21 June 2018

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A new perspective on isochore evolution.

21 June 2018

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A systematic analysis of disease-associated variants in the 3' regulatory regions of human protein-coding genes II: the importance of mRNA secondary structure in assessing the functionality of 3' UTR variants

21 June 2018

1 reference

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21 June 2018

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Impact of RNA structure on the prediction of donor and acceptor splice sites

21 June 2018

1 reference

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A periodic pattern of mRNA secondary structure created by the genetic code

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2442090

Hairpin RNA: a secondary structure of primary importance

21 June 2018

1 reference

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miRBase: microRNA sequences, targets and gene nomenclature

21 June 2018

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The snoRNA HBII-52 regulates alternative splicing of the serotonin receptor 2C

21 June 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2442090

Statistical evidence for conserved, local secondary structure in the coding regions of eukaryotic mRNAs and pre-mRNAs

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2442090

Regulation of translation via mRNA structure in prokaryotes and eukaryotes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2442090

Evidence for selection on synonymous mutations affecting stability of mRNA secondary structure in mammals

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2442090

Predicting a set of minimal free energy RNA secondary structures common to two sequences

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2442090

The implications of structured 5' untranslated regions on translation and disease

21 June 2018

1 reference

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Zipcodes and postage stamps: mRNA localisation signals and their trans-acting binding proteins

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2442090

Influence of RNA secondary structure on the pre-mRNA splicing process

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2442090

Structure, function and evolution of CpG island promoters

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2442090

Widespread selection for local RNA secondary structure in coding regions of bacterial genes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2442090

Vienna RNA secondary structure server

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2442090

Synonymous mutations in the human dopamine receptor D2 (DRD2) affect mRNA stability and synthesis of the receptor

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2442090

Regularities of context-dependent codon bias in eukaryotic genes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2442090

No evidence that mRNAs have lower folding free energies than random sequences with the same dinucleotide distribution

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2442090

Genome signature comparisons among prokaryote, plasmid, and mitochondrial DNA

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2442090

mRNAs have greater negative folding free energies than shuffled or codon choice randomized sequences

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2442090

What drives codon choices in human genes?

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2442090

The vertebrate genome: isochores and evolution

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2442090

Dinucleotide relative abundance extremes: a genomic signature

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2442090

A stem-loop "kissing" model for the initiation of recombination and the origin of introns

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2442090

CpG islands in vertebrate genomes

21 June 2018

1 reference

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Human catechol-O-methyltransferase haplotypes modulate protein expression by altering mRNA secondary structure.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2442090

The CpG island searcher: a new WWW resource.

31 October 2018

1 reference

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Comparative DNA analysis across diverse genomes.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2442090

An alternative way of thinking about stem-loops in DNA. A case study of the human G0S2 gene.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2442090

Stem-loop potential in MHC genes: a new way of evaluating positive Darwinian selection?

31 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18549495

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2164-9-284

1 reference

Dimensions Publication ID

26 July 2017

1 reference

https://scigraph.springernature.com/pub.10.1186/1471-2164-9-284

9 September 2019

1 reference

26 July 2017

1 reference