(Q33356804)

26 July 2017

title

Conflicting selection pressures on synonymous codon use in yeast suggest selection on mRNA secondary structures (English)

1 reference

26 July 2017

Nina Stoletzki

1

0 references

publication date

31 July 2008

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26 July 2017

published in

BMC Evolutionary Biology

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26 July 2017

volume

8

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26 July 2017

page(s)

224

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Considerations in the identification of functional RNA structural elements in genomic alignments

26 July 2017

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14 July 2018

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14 July 2018

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14 July 2018

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14 July 2018

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14 July 2018

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14 July 2018

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14 July 2018

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14 July 2018

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14 July 2018

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14 July 2018

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14 July 2018

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14 July 2018

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14 July 2018

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14 July 2018

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14 July 2018

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14 July 2018

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14 July 2018

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14 July 2018

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Synonymous mutations in the human dopamine receptor D2 (DRD2) affect mRNA stability and synthesis of the receptor

14 July 2018

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14 July 2018

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14 July 2018

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14 July 2018

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14 July 2018

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14 July 2018

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14 July 2018

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The relationship between third-codon position nucleotide content, codon bias, mRNA secondary structure and gene expression in the drosophilid alcohol dehydrogenase genes Adh and Adhr

14 July 2018

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Selection intensity against deleterious mutations in RNA secondary structures and rate of compensatory nucleotide substitutions

14 July 2018

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RNA secondary structure and compensatory evolution

14 July 2018

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No evidence that mRNAs have lower folding free energies than random sequences with the same dinucleotide distribution

14 July 2018

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Single-nucleotide polymorphisms can cause different structural folds of mRNA.

14 July 2018

1 reference

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Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure

14 July 2018

1 reference

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mRNAs have greater negative folding free energies than shuffled or codon choice randomized sequences

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2533328

A highly conserved sequence in the 3'-untranslated region of the drosophila Adh gene plays a functional role in Adh expression

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2533328

Nucleosome DNA sequence pattern revealed by multiple alignment of experimentally mapped sequences

14 July 2018

1 reference

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Maintenance of pre-mRNA secondary structure by epistatic selection.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2533328

Correlation between the abundance of Escherichia coli transfer RNAs and the occurrence of the respective codons in its protein genes: A proposal for a synonymous codon choice that is optimal for the E. coli translational system

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2533328

Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2533328

Codon usage and tRNA content in unicellular and multicellular organisms

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2533328

The involvement of mRNA secondary structure in protein synthesis

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2533328

The selection-mutation-drift theory of synonymous codon usage

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2533328

The equilibrium partition function and base pair binding probabilities for RNA secondary structure

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2533328

Human catechol-O-methyltransferase haplotypes modulate protein expression by altering mRNA secondary structure.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2533328

Calculating nucleic acid secondary structure

31 October 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2533328

Transfer RNA gene redundancy and translational selection in Saccharomyces cerevisiae.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2533328

Translation inhibition by an mRNA coding region secondary structure is determined by its proximity to the AUG initiation codon

31 October 2018

1 reference

12 December 2020

Analysis of the role of the Shine-Dalgarno sequence and mRNA secondary structure on the efficiency of translational initiation in the Euglena gracilis chloroplast atpH mRNA

1 reference

12 December 2020

Selection conflicts, gene expression, and codon usage trends in yeast

1 reference

12 December 2020

Nucleosome positions predicted through comparative genomics

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12 December 2020

Looking for organization patterns of highly expressed genes: purine-pyrimidine composition of precursor mRNAs

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12 December 2020

Identifiers

DOI

10.1186/1471-2148-8-224

1 reference

Dimensions Publication ID

26 July 2017

1 reference

https://scigraph.springernature.com/pub.10.1186/1471-2148-8-224

9 September 2019

1 reference

26 July 2017

1 reference