(Q33358609)

26 July 2017

title

Collection and comparative analysis of 1888 full-length cDNAs from wild rice Oryza rufipogon Griff. W1943. (English)

1 reference

26 July 2017

Oryza rufipogon

1 reference

Tingting Lu

1

1 reference

26 July 2017

Shuliang Yu

2

1 reference

26 July 2017

Danlin Fan

3

1 reference

26 July 2017

Jie Mu

4

1 reference

26 July 2017

Yingying Shangguan

5

1 reference

26 July 2017

Zixuan Wang

6

1 reference

26 July 2017

Yuzo Minobe

7

1 reference

26 July 2017

Zhixin Lin

8

1 reference

26 July 2017

Bin Han

9

1 reference

26 July 2017

publication date

6 August 2008

1 reference

26 July 2017

1 reference

26 July 2017

volume

15

1 reference

26 July 2017

issue

5

1 reference

26 July 2017

page(s)

285-295

1 reference

Gene organization in rice revealed by full-length cDNA mapping and gene expression analysis through microarray

26 July 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2575888

miRBase: tools for microRNA genomics

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2575888

Distinct class of putative "non-conserved" promoters in humans: comparative studies of alternative promoters of human and mouse genes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2575888

Identification of a drought tolerant introgression line derived from Dongxiang common wild rice (O. rufipogon Griff.).

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2575888

PAL2NAL: robust conversion of protein sequence alignments into the corresponding codon alignments

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2575888

Phylogeography of Asian wild rice, Oryza rufipogon, reveals multiple independent domestications of cultivated rice, Oryza sativa

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2575888

Genome-wide searching of single-nucleotide polymorphisms among eight distantly and closely related rice cultivars (Oryza sativa L.) and a wild accession (Oryza rufipogon Griff.).

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2575888

Genome-wide analysis of mammalian promoter architecture and evolution

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2575888

Plant MPSS databases: signature-based transcriptional resources for analyses of mRNA and small RNA

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2575888

The map-based sequence of the rice genome

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2575888

Rfam: annotating non-coding RNAs in complete genomes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2575888

Comparative analysis of 5,211 leaf ESTs of wild rice (Oryza minuta).

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2575888

The Pfam protein families database

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2575888

Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2575888

Mfold web server for nucleic acid folding and hybridization prediction

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2575888

TIGR Gene Indices clustering tools (TGICL): a software system for fast clustering of large EST datasets

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2575888

A Draft Sequence of the Rice Genome (Oryza sativa L. ssp. japonica)

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2575888

The InterPro database, an integrated documentation resource for protein families, domains and functional sites

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2575888

EMBOSS: the European Molecular Biology Open Software Suite

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2575888

A computer program for aligning a cDNA sequence with a genomic DNA sequence

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2575888

Base-calling of automated sequencer traces using phred. II. Error probabilities

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2575888

The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2575888

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2575888

High-efficiency full-length cDNA cloning by biotinylated CAP trapper

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2575888

The genes encoding the small subunit of ribulose-1,5-bisphosphate carboxylase are expressed differentially in petunia leaves

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2575888

A cDNA-based comparison of dehydration-induced proteins (dehydrins) in barley and corn

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2575888

A collection of 10,096 indica rice full-length cDNAs reveals highly expressed sequence divergence between Oryza sativa indica and japonica subspecies.

21 June 2018

1 reference

https://api.crossref.org/works/10.1093%2FDNARES%2FDSN018

Base-calling of automated sequencer traces using phred. I. Accuracy assessment

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FDNARES%2FDSN018

Polyphyletic origin of cultivated rice: based on the interspersion pattern of SINEs.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FDNARES%2FDSN018

Polymorphism and phylogenetic relationships among species in the genus Oryza as determined by analysis of nuclear RFLPs

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2575888

Sequencing multiple and diverse rice varieties. Connecting whole-genome variation with phenotypes

31 October 2018

1 reference

https://api.crossref.org/works/10.1093%2FDNARES%2FDSN018

Fine mapping of a quantitative trait locus for grain number per panicle from wild rice (Oryza rufipogon Griff.).

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18687674

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Circadian rhythmicity in the expression of a novel light-regulated rice gene

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18687674

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/DNARES/DSN018

1 reference

26 July 2017

1 reference

26 July 2017

1 reference