(Q33394587)

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Physcomitrella patens DCL3 is required for 22-24 nt siRNA accumulation, suppression of retrotransposon-derived transcripts, and normal development

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scholarly article

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19096705%20AND%20SRC:MED&resulttype=core&format=json

18 January 2020

Physcomitrella patens DCL3 is required for 22-24 nt siRNA accumulation, suppression of retrotransposon-derived transcripts, and normal development (English)

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Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19096705%20AND%20SRC:MED&resulttype=core&format=json

18 January 2020

retrotransposon

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Physcomitrella patens

object named as

Physcomitrella patens

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based on heuristic

inferred from title

Charles Addo-Quaye

2

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18 January 2020

4

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18 January 2020

author name string

Sung Hyun Cho

1

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18 January 2020

Ceyda Coruh

3

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18 January 2020

Zhaorong Ma

5

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18 January 2020

Wolfgang Frank

6

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18 January 2020

Michael J Axtell

7

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18 January 2020

publication date

19 December 2008

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18 January 2020

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Europe PubMed Central

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18 January 2020

4

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18 January 2020

12

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18 January 2020

e1000314

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18 January 2020

copyright license

Creative Commons Attribution 4.0 International

19 December 2008

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April 2022 Public Data File from Crossref

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0 references

Conifers have a unique small RNA silencing signature

1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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Common functions for diverse small RNAs of land plants

1 reference

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14 July 2018

Argonaute proteins: mediators of RNA silencing

1 reference

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1 reference

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14 July 2018

Role of RNA polymerase IV in plant small RNA metabolism

1 reference

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14 July 2018

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1 reference

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1 reference

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14 July 2018

Genome-wide profiling and analysis of Arabidopsis siRNAs

1 reference

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1 reference

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1 reference

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14 July 2018

Identification of trans-acting siRNAs in moss and an RNA-dependent RNA polymerase required for their biogenesis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2600652

14 July 2018

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1 reference

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MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant

1 reference

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1 reference

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1 reference

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Animal MicroRNAs confer robustness to gene expression and have a significant impact on 3'UTR evolution

1 reference

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1 reference

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1 reference

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1 reference

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Partially redundant functions of Arabidopsis DICER-like enzymes and a role for DCL4 in producing trans-acting siRNAs.

1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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12 December 2020

based on heuristic

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10.1371/JOURNAL.PGEN.1000314

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19096705%20AND%20SRC:MED&resulttype=core&format=json

18 January 2020

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Europe PubMed Central

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18 January 2020

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19096705%20AND%20SRC:MED&resulttype=core&format=json

18 January 2020

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