(Q33406834)

26 July 2017

title

Quantitative community fingerprinting methods for estimating the abundance of operational taxonomic units in natural microbial communities (English)

1 reference

26 July 2017

1

Alban Ramette

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language of work or name

English

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publication date

6 February 2009

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Applied and Environmental Microbiology

26 July 2017

published in

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26 July 2017

volume

75

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26 July 2017

issue

8

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26 July 2017

page(s)

2495-2505

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Microbial indicators of aquatic ecosystem change: current applications to eutrophication studies.

26 July 2017

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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Assessment of biases associated with profiling simple, model communities using terminal-restriction fragment length polymorphism-based analyses.

21 June 2018

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21 June 2018

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21 June 2018

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Quantitative molecular assay for fingerprinting microbial communities of wastewater and estrogen-degrading consortia

21 June 2018

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21 June 2018

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Geographic and environmental sources of variation in lake bacterial community composition

21 June 2018

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Comparison of different primer sets for use in automated ribosomal intergenic spacer analysis of complex bacterial communities

21 June 2018

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Richness and diversity of bacterioplankton species along an estuarine gradient in Moreton Bay, Australia

21 June 2018

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Web-based phylogenetic assignment tool for analysis of terminal restriction fragment length polymorphism profiles of microbial communities

21 June 2018

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Variation between observed and true Terminal Restriction Fragment length is dependent on true TRF length and purine content

21 June 2018

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Terminal restriction fragment length polymorphism data analysis for quantitative comparison of microbial communities

21 June 2018

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Evaluation of PCR amplification bias by terminal restriction fragment length polymorphism analysis of small-subunit rRNA and mcrA genes by using defined template mixtures of methanogenic pure cultures and soil DNA extracts

21 June 2018

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Characterization of bacterial and fungal soil communities by automated ribosomal intergenic spacer analysis fingerprints: biological and methodological variability

21 June 2018

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PCR-SSCP comparison of 16S rDNA sequence diversity in soil DNA obtained using different isolation and purification methods

21 June 2018

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21 June 2018

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Terminal restriction fragment length polymorphism analysis program, a web-based research tool for microbial community analysis

21 June 2018

1 reference

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Direct profiling of the yeast dynamics in wine fermentations

21 June 2018

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Automated approach for ribosomal intergenic spacer analysis of microbial diversity and its application to freshwater bacterial communities.

21 June 2018

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A new approach to utilize PCR-single-strand-conformation polymorphism for 16S rRNA gene-based microbial community analysis.

21 June 2018

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The influence of fluorescent dye structure on the electrophoretic mobility of end-labeled DNA

21 June 2018

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Determination of microbial diversity in environmental samples: pitfalls of PCR-based rRNA analysis

21 June 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2675222

Frequency of formation of chimeric molecules as a consequence of PCR coamplification of 16S rRNA genes from mixed bacterial genomes.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2675222

Characterization of microbial diversity by determining terminal restriction fragment length polymorphisms of genes encoding 16S rRNA.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2675222

Bias caused by template annealing in the amplification of mixtures of 16S rRNA genes by PCR

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2675222

Effect of genome size and rrn gene copy number on PCR amplification of 16S rRNA genes from a mixture of bacterial species

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2675222

Detection and enumeration of bacteria in soil by direct DNA extraction and polymerase chain reaction

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2675222

Characterization of a three bacteria mixed culture in a chemostat: evaluation and application of a quantitative terminal-restriction fragment length polymorphism (T-RFLP) analysis for absolute and species specific cell enumeration.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2675222

Improved strategy for comparing microbial assemblage fingerprints

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2675222

An evaluation of terminal-restriction fragment length polymorphism (T-RFLP) analysis for the study of microbial community structure and dynamics

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2675222

Prokaryotic Genome Size and SSU rDNA Copy Number: Estimation of Microbial Relative Abundance from a Mixed Population

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2675222

Microorganisms, macroorganisms and ecology

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2675222

Estimation of bacterial densities by means of the "most probable number"

31 October 2018

1 reference

12 December 2020

Denaturing gradient electrophoresis (DGE) and single-strand conformation polymorphism (SSCP) molecular fingerprintings revisited by simulation and used as a tool to measure microbial diversity

1 reference

12 December 2020

How well do multivariate data sets match? The advantages of a Procrustean superimposition approach over the Mantel test

1 reference

12 December 2020

Ecologically meaningful transformations for ordination of species data

1 reference

12 December 2020

Identifiers

DOI

10.1128/AEM.02409-08

1 reference

26 July 2017

1 reference

26 July 2017

1 reference