(Q33414665)

26 July 2017

title

A biological evaluation of six gene set analysis methods for identification of differentially expressed pathways in microarray data (English)

1 reference

26 July 2017

9

Philip Halloran

1 reference

26 July 2017

Irina Dinu

1

1 reference

26 July 2017

Qi Liu

2

1 reference

26 July 2017

John D Potter

3

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26 July 2017

Adeniyi J Adewale

4

1 reference

26 July 2017

Gian S Jhangri

5

1 reference

26 July 2017

Thomas Mueller

6

1 reference

26 July 2017

Gunilla Einecke

7

1 reference

26 July 2017

Konrad Famulsky

8

1 reference

26 July 2017

Yutaka Yasui

10

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26 July 2017

publication date

20 June 2008

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26 July 2017

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26 July 2017

volume

6

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26 July 2017

page(s)

357-368

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Comparative evaluation of gene-set analysis methods

26 July 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2623289

Improving gene set analysis of microarray data by SAM-GS.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2623289

Transcript and protein expression profiles of the NCI-60 cancer cell panel: an integromic microarray study.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2623289

Analyzing gene expression data in terms of gene sets: methodological issues

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2623289

Mutation analysis of 24 known cancer genes in the NCI-60 cell line set.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2623289

Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2623289

Discovering statistically significant pathways in expression profiling studies

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2623289

Pathway level analysis of gene expression using singular value decomposition

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2623289

A global test for groups of genes: testing association with a clinical outcome

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2623289

Exploration, normalization, and summaries of high density oligonucleotide array probe level data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2623289

PGC-1alpha-responsive genes involved in oxidative phosphorylation are coordinately downregulated in human diabetes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2623289

Microarray data normalization and transformation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2623289

Comparing the areas under two or more correlated receiver operating characteristic curves: a nonparametric approach

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2623289

Testing differential gene expression in functional groups. Goeman's global test versus an ANCOVA approach.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2623289

The human tumour suppressor PTEN regulates longevity and dauer formation in Caenorhabditis elegans

31 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19259416

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

PMC publication ID

2623289

1 reference

26 July 2017

1 reference