(Q33433203)

English

Detection and characterization of 3D-signature phosphorylation site motifs and their contribution towards improved phosphorylation site prediction in proteins

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scholarly article

1 reference

Europe PubMed Central

26 July 2017

Detection and characterization of 3D-signature phosphorylation site motifs and their contribution towards improved phosphorylation site prediction in proteins (English)

1 reference

Europe PubMed Central

26 July 2017

phosphorylation

1 reference

based on heuristic

inferred from title

object named as

Dirk Walther

5

0 references

Wolfram Weckwerth

3

object named as

Wolfram Weckwerth

1 reference

Europe PubMed Central

26 July 2017

4

object named as

Joachim Selbig

1 reference

Europe PubMed Central

26 July 2017

author name string

Pawel Durek

1

1 reference

Europe PubMed Central

26 July 2017

Christian Schudoma

2

1 reference

Europe PubMed Central

26 July 2017

publication date

21 April 2009

1 reference

Europe PubMed Central

26 July 2017

BMC Bioinformatics

1 reference

Europe PubMed Central

26 July 2017

10

1 reference

Europe PubMed Central

26 July 2017

117

1 reference

Europe PubMed Central

26 July 2017

copyright license

Creative Commons Attribution 2.0 Generic

21 April 2009

1 reference

April 2022 Public Data File from Crossref

copyright status

1 reference

April 2022 Public Data File from Crossref

https://scigraph.springernature.com/pub.10.1186/1471-2105-10-117

0 references

PHOSIDA (phosphorylation site database): management, structural and evolutionary investigation, and prediction of phosphosites

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2683816

14 July 2018

A systematic comparative and structural analysis of protein phosphorylation sites based on the mtcPTM database

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2683816

14 July 2018

KinasePhos 2.0: a web server for identifying protein kinase-specific phosphorylation sites based on sequences and coupling patterns

1 reference

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14 July 2018

SVM Classifier - a comprehensive java interface for support vector machine classification of microarray data

1 reference

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14 July 2018

Docking interactions in protein kinase and phosphatase networks

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2683816

14 July 2018

Assembly of transmembrane helices of simple polytopic membrane proteins from sequence conservation patterns

1 reference

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14 July 2018

Characterizing the microenvironment surrounding phosphorylated protein sites.

1 reference

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14 July 2018

PPSP: prediction of PK-specific phosphorylation site with Bayesian decision theory

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Global analysis of protein phosphorylation in yeast

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An iterative statistical approach to the identification of protein phosphorylation motifs from large-scale data sets

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14 July 2018

Substrate specificity analysis of protein kinase complex Dbf2-Mob1 by peptide library and proteome array screening

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Phospho.ELM: a database of experimentally verified phosphorylation sites in eukaryotic proteins

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14 July 2018

Prediction of post-translational glycosylation and phosphorylation of proteins from the amino acid sequence

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14 July 2018

The importance of intrinsic disorder for protein phosphorylation

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14 July 2018

Target specificity analysis of the Abl kinase using peptide microarray data

1 reference

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Protein disorder prediction: implications for structural proteomics

1 reference

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Kernel hierarchical gene clustering from microarray expression data

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Scansite 2.0: Proteome-wide prediction of cell signaling interactions using short sequence motifs

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The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003

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14 July 2018

The protein kinase complement of the human genome

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Peptide arrays: from macro to micro

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Sequence and structure-based prediction of eukaryotic protein phosphorylation sites

1 reference

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14 July 2018

AAindex: amino acid index database

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14 July 2018

GTP plus water mimic ATP in the active site of protein kinase CK2

1 reference

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14 July 2018

PhosphoBase, a database of phosphorylation sites: release 2.0.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2683816

14 July 2018

How do protein kinases recognize their substrates?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2683816

14 July 2018

Signal-transducing protein phosphorylation cascades mediated by Ras/Rho proteins in the mammalian cell: the potential for multiplex signalling

1 reference

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14 July 2018

The MAP kinase cascade is essential for diverse signal transduction pathways

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2683816

14 July 2018

The effects of phosphorylation on the structure and function of proteins

1 reference

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CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

1 reference

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Characterizing the microenvironment surrounding protein sites

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2683816

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A method of comparing the areas under receiver operating characteristic curves derived from the same cases

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Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features

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The protein kinase family: conserved features and deduced phylogeny of the catalytic domains

1 reference

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A thousand and one protein kinases

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2683816

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Protein kinase recognition sequence motifs

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Sequence logos: a new way to display consensus sequences

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Conformational preferences of amino acids in globular proteins

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31 October 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2683816

31 October 2018

Prediction of phosphorylation sites using SVMs

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2683816

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Grabbing phosphoproteins

1 reference

https://pubmed.ncbi.nlm.nih.gov/19383128

12 December 2020

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1 reference

https://pubmed.ncbi.nlm.nih.gov/19383128

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Docking interactions induce exposure of activation loop in the MAP kinase ERK2

1 reference

https://pubmed.ncbi.nlm.nih.gov/19383128

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1186/1471-2105-10-117

1 reference

Europe PubMed Central

26 July 2017

DBLP publication ID

journals/bmcbi/DurekSWSW09

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

Europe PubMed Central

26 July 2017

1 reference

Europe PubMed Central

26 July 2017

ResearchGate publication ID

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